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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VTN is prognostic, high expression is favorable in liver cancer
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
2216.6
Number of samples
365
Samples
Sample
Description
FPKM
TCGA-ES-A2HS-01A
80 years, male, white, stage:i, dead, 688 days
6970.5
TCGA-DD-A4NN-01A
56 years, female, white, stage:i, dead, 899 days
6149.5
TCGA-CC-5259-01A
60 years, female, asian, stage:iiic, alive, 250 days
5639.3
TCGA-KR-A7K2-01A
64 years, male, white, stage:i, alive, 829 days
5500.0
TCGA-FV-A4ZP-01A
78 years, male, white, stage:iiia, dead, 2486 days
5367.5
TCGA-UB-A7ME-01A
51 years, male, asian, stage:i, alive, 486 days
5365.0
TCGA-DD-A3A9-01A
64 years, female, white, stage:ivb, dead, 931 days
5222.1
TCGA-G3-A5SI-01A
44 years, male, asian, stage:ii, dead, 768 days
5080.4
TCGA-FV-A496-01A
84 years, female, white, stage:i, alive, 10 days
4872.3
TCGA-G3-AAV0-01A
58 years, male, asian, stage:i, alive, 476 days
4800.7
TCGA-2Y-A9H6-01A
68 years, female, white, stage:i, alive, 357 days
4723.8
TCGA-ED-A7PY-01A
20 years, female, asian, stage:ii, alive, 390 days
4680.2
TCGA-BC-A5W4-01A
69 years, male, white, stage:iiia, dead, 547 days
4674.2
TCGA-BC-A217-01A
75 years, female, white, stage:ii, dead, 1397 days
4624.1
TCGA-BD-A2L6-01A
69 years, male, white, alive, 1363 days
4592.1
TCGA-BC-A10Y-01A
76 years, male, white, dead, 711 days
4554.0
TCGA-G3-A7M8-01A
31 years, male, asian, stage:i, alive, 430 days
4526.2
TCGA-G3-A25Z-01A
58 years, male, asian, stage:i, alive, 655 days
4401.3
TCGA-DD-AADY-01A
55 years, female, asian, stage:i, alive, 555 days
4397.4
TCGA-DD-AACF-01A
68 years, male, asian, stage:i, dead, 365 days
4324.5
TCGA-G3-A25Y-01A
52 years, female, asian, stage:i, dead, 452 days
4267.0
TCGA-DD-AACS-01A
39 years, male, asian, stage:i, alive, 1804 days
4257.1
TCGA-DD-AADI-01A
43 years, female, asian, stage:i, alive, 1085 days
4240.3
TCGA-FV-A23B-01A
70 years, female, white, stage:ii, dead, 1852 days
4162.3
TCGA-2Y-A9H7-01A
81 years, female, white, stage:i, alive, 1168 days
4130.6
TCGA-EP-A2KA-01A
52 years, female, white, stage:iiia, dead, 627 days
4105.3
TCGA-DD-A11D-01A
57 years, female, white, stage:i, dead, 1560 days
4087.8
TCGA-DD-A3A5-01A
66 years, female, white, stage:iii, dead, 3125 days
4077.5
TCGA-T1-A6J8-01A
68 years, male, white, alive, 23 days
4065.5
TCGA-DD-AAE7-01A
72 years, male, asian, stage:i, alive, 644 days
4032.0
TCGA-ED-A66Y-01A
51 years, female, asian, stage:iiia, dead, 296 days
4031.1
TCGA-DD-AADK-01A
68 years, female, asian, stage:ii, alive, 1049 days
3926.2
TCGA-2Y-A9H8-01A
85 years, female, white, dead, 633 days
3841.3
TCGA-5C-A9VH-01A
70 years, male, white, stage:i, alive, 322 days
3821.2
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:i, alive, 1900 days
3818.9
TCGA-2Y-A9GU-01A
55 years, female, white, stage:i, alive, 1939 days
3816.3
TCGA-K7-A6G5-01A
66 years, male, white, stage:i, alive, 512 days
3803.7
TCGA-DD-A11B-01A
73 years, male, white, stage:i, dead, 14 days
3765.1
TCGA-2Y-A9H9-01A
70 years, male, white, stage:i, alive, 697 days
3739.8
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:iiib, alive, 396 days
3715.9
TCGA-DD-AADP-01A
45 years, male, asian, stage:i, alive, 458 days
3712.0
TCGA-O8-A75V-01A
54 years, male, stage:i, alive, 538 days
3683.2
TCGA-DD-A4NO-01A
66 years, male, white, stage:i, alive, 2245 days
3668.0
TCGA-DD-AAEI-01A
72 years, male, asian, stage:i, alive, 1531 days
3613.1
TCGA-DD-AAD3-01A
43 years, male, asian, stage:i, alive, 1295 days
3604.9
TCGA-2Y-A9H3-01A
45 years, male, white, stage:ii, alive, 1516 days
3578.2
TCGA-DD-AADA-01A
66 years, female, asian, stage:i, alive, 1233 days
3552.6
TCGA-CC-A8HS-01A
18 years, male, asian, stage:iiic, dead, 300 days
3550.7
TCGA-RC-A7S9-01A
47 years, female, asian, stage:i, alive, 640 days
3501.3
TCGA-G3-A3CI-01A
71 years, male, white, stage:i, alive, 180 days
3491.1
TCGA-DD-AADJ-01A
70 years, female, asian, stage:i, alive, 1066 days
3466.9
TCGA-DD-A1EI-01A
46 years, male, asian, stage:i, alive, 183 days
3456.8
TCGA-DD-AACU-01A
59 years, male, asian, stage:i, alive, 1567 days
3455.4
TCGA-G3-A5SJ-01A
59 years, male, white, stage:i, alive, 698 days
3453.3
TCGA-DD-A4NP-01A
32 years, male, white, stage:i, alive, 3308 days
3434.6
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:i, alive, 2728 days
3428.5
TCGA-DD-AACC-01A
61 years, male, asian, stage:i, dead, 1685 days
3427.0
TCGA-DD-AADV-01A
50 years, male, asian, stage:i, alive, 574 days
3380.1
TCGA-CC-5261-01A
44 years, male, asian, stage:ii, dead, 97 days
3376.0
TCGA-DD-AAVS-01A
56 years, male, asian, stage:i, alive, 1823 days
3373.5
TCGA-EP-A2KB-01A
46 years, female, white, stage:i, dead, 596 days
3340.2
TCGA-DD-AADS-01A
63 years, male, asian, stage:i, alive, 474 days
3304.4
TCGA-ZS-A9CE-01A
79 years, female, white, stage:ii, alive, 1241 days
3285.9
TCGA-ZP-A9D0-01A
67 years, female, black or african american, alive, 1091 days
3271.5
TCGA-ED-A8O5-01A
59 years, female, asian, stage:iiia, alive, 406 days
3270.1
TCGA-DD-A1EB-01A
72 years, female, stage:i, alive, 2017 days
3258.9
TCGA-DD-AAD1-01A
51 years, female, asian, stage:i, alive, 564 days
3258.8
TCGA-UB-A7MA-01A
62 years, female, white, stage:ii, alive, 848 days
3257.2
TCGA-FV-A3R3-01A
38 years, female, white, stage:i, dead, 366 days
3257.1
TCGA-BC-A10S-01A
81 years, male, white, dead, 1423 days
3199.4
TCGA-DD-AACW-01A
43 years, male, asian, stage:i, alive, 1424 days
3178.0
TCGA-DD-A4ND-01A
56 years, female, white, stage:i, alive, 2746 days
3152.5
TCGA-DD-A73G-01A
73 years, female, white, stage:i, alive, 3478 days
3139.9
TCGA-MR-A520-01A
58 years, male, white, stage:i, alive, 229 days
3133.3
TCGA-DD-AAE1-01A
52 years, male, asian, stage:i, alive, 552 days
3107.9
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:iiia, alive, 20 days
3102.0
TCGA-CC-A9FS-01A
55 years, male, asian, stage:ii, alive, 211 days
3100.0
TCGA-G3-A7M5-01A
76 years, male, asian, stage:i, alive, 447 days
3076.0
TCGA-ED-A7XO-01A
29 years, male, asian, stage:iiia, alive, 427 days
3047.8
TCGA-DD-A73D-01A
68 years, female, white, stage:ii, alive, 693 days
3043.0
TCGA-DD-AAC9-01A
51 years, male, asian, stage:i, alive, 347 days
3039.0
TCGA-BD-A3EP-01A
76 years, female, black or african american, stage:i, alive, 409 days
3028.6
TCGA-RC-A7SK-01A
59 years, male, asian, stage:i, alive, 472 days
3027.5
TCGA-HP-A5N0-01A
88 years, female, dead, 1147 days
3024.9
TCGA-DD-A11A-01A
67 years, male, black or african american, stage:i, alive, 79 days
3022.9
TCGA-DD-A3A3-01A
45 years, male, asian, stage:i, dead, 535 days
3018.6
TCGA-DD-AADW-01A
48 years, male, asian, stage:i, alive, 587 days
3007.2
TCGA-G3-AAUZ-01A
48 years, male, stage:i, alive, 480 days
2967.0
TCGA-ZP-A9CY-01A
66 years, female, white, alive, 782 days
2952.7
TCGA-DD-AACY-01A
61 years, male, asian, stage:i, alive, 1450 days
2952.1
TCGA-ED-A4XI-01A
58 years, male, asian, stage:ii, alive, 819 days
2929.4
TCGA-DD-AAVV-01A
56 years, male, asian, stage:ii, alive, 2455 days
2913.2
TCGA-ZP-A9CV-01A
59 years, male, white, dead, 1088 days
2910.4
TCGA-DD-A39Z-01A
43 years, female, stage:ii, dead, 601 days
2907.8
TCGA-BC-A69I-01A
69 years, male, white, stage:i, alive, 387 days
2894.2
TCGA-DD-A118-01A
77 years, female, white, stage:ii, alive, 3437 days
2886.7
TCGA-ED-A66X-01A
35 years, male, asian, stage:iiia, alive, 406 days
2868.7
TCGA-DD-A113-01A
55 years, female, white, stage:ii, alive, 2425 days
2863.2
TCGA-MI-A75G-01A
63 years, male, white, stage:ii, alive, 698 days
2857.0
TCGA-DD-A73C-01A
65 years, female, white, stage:iiia, alive, 701 days
2855.9
TCGA-ED-A8O6-01A
50 years, female, asian, stage:iiia, dead, 56 days
2837.5
TCGA-DD-A4NL-01A
46 years, male, white, stage:i, alive, 1711 days
2817.8
TCGA-UB-AA0U-01A
60 years, male, white, stage:ii, alive, 327 days
2811.7
TCGA-DD-A11C-01A
69 years, male, white, stage:i, alive, 662 days
2809.0
TCGA-DD-A1EH-01A
23 years, male, white, stage:iii, alive, 1495 days
2800.4
TCGA-5C-AAPD-01A
61 years, male, asian, stage:ii, alive, 20 days
2798.5
TCGA-FV-A2QR-01A
male, white, stage:i, dead, 581 days
2797.6
TCGA-DD-AACV-01A
53 years, male, asian, stage:i, alive, 1531 days
2792.8
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:i, dead, 19 days
2786.2
TCGA-XR-A8TG-01A
59 years, male, white, stage:i, alive, 898 days
2783.2
TCGA-FV-A3I1-01A
female, white, stage:ii, dead, 247 days
2780.4
TCGA-DD-A73F-01A
77 years, female, white, stage:i, alive, 1085 days
2779.8
TCGA-K7-A5RF-01A
64 years, male, white, stage:i, alive, 631 days
2762.3
TCGA-G3-A5SM-01A
58 years, male, white, stage:ii, alive, 520 days
2758.5
TCGA-2Y-A9GT-01A
51 years, male, white, stage:i, dead, 1624 days
2742.4
TCGA-FV-A495-01A
51 years, female, white, stage:ii, alive, 1 days
2722.8
TCGA-DD-AACN-01A
32 years, male, asian, stage:i, alive, 1302 days
2709.7
TCGA-DD-AAEA-01A
65 years, male, asian, stage:i, alive, 575 days
2709.6
TCGA-DD-AACJ-01A
75 years, male, asian, stage:ii, alive, 2102 days
2686.4
TCGA-DD-AACI-01A
69 years, male, asian, stage:ii, alive, 1618 days
2682.0
TCGA-G3-A7M7-01A
65 years, male, white, stage:i, alive, 361 days
2660.3
TCGA-CC-5264-01A
71 years, male, asian, stage:iiia, dead, 102 days
2651.5
TCGA-2Y-A9H5-01A
59 years, female, white, stage:i, dead, 555 days
2636.7
TCGA-NI-A4U2-01A
71 years, male, white, stage:iiia, dead, 1791 days
2619.6
TCGA-5R-AAAM-01A
65 years, female, white, stage:ii, dead, 46 days
2616.0
TCGA-DD-A73B-01A
72 years, female, white, stage:i, dead, 283 days
2606.3
TCGA-WQ-AB4B-01A
62 years, male, white, stage:ii, alive, 395 days
2605.9
TCGA-FV-A2QQ-01A
80 years, male, white, stage:i, alive, 729 days
2586.6
TCGA-XR-A8TC-01A
43 years, female, white, stage:i, alive, 1339 days
2586.5
TCGA-DD-AACO-01A
40 years, male, asian, stage:i, alive, 1876 days
2581.3
TCGA-BC-A69H-01A
64 years, male, white, stage:ii, alive, 444 days
2579.0
TCGA-BC-A110-01A
51 years, female, black or african american, dead, 2116 days
2565.8
TCGA-DD-AAED-01A
51 years, male, asian, stage:i, alive, 763 days
2561.6
TCGA-G3-A25V-01A
68 years, male, white, stage:i, alive, 860 days
2558.8
TCGA-BC-A216-01A
62 years, female, white, stage:iiia, alive, 1351 days
2544.3
TCGA-DD-AAD8-01A
73 years, female, asian, stage:i, alive, 1219 days
2543.6
TCGA-DD-AAD2-01A
66 years, male, asian, stage:i, alive, 658 days
2514.1
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:ii, alive, 6 days
2513.3
TCGA-2Y-A9GV-01A
54 years, female, white, stage:i, dead, 2532 days
2468.4
TCGA-ZP-A9D1-01A
56 years, female, white, alive, 21 days
2460.4
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:i, dead, 438 days
2451.9
TCGA-LG-A9QD-01A
68 years, male, white, stage:iiia, alive, 366 days
2447.6
TCGA-XR-A8TF-01A
74 years, male, white, stage:i, dead, 693 days
2444.1
TCGA-UB-A7MC-01A
59 years, male, white, stage:iiia, alive, 500 days
2441.0
TCGA-2Y-A9HB-01A
66 years, male, stage:i, alive, 260 days
2436.3
TCGA-CC-A123-01A
24 years, female, asian, stage:iiia, alive, 219 days
2436.2
TCGA-ZP-A9CZ-01A
72 years, male, asian, alive, 706 days
2428.3
TCGA-2Y-A9GS-01A
58 years, male, white, dead, 724 days
2423.4
TCGA-CC-A3MC-01A
54 years, male, asian, stage:iiia, alive, 363 days
2420.4
TCGA-DD-A4NK-01A
80 years, female, white, stage:iiia, dead, 1210 days
2412.5
TCGA-DD-AAEH-01A
73 years, male, asian, stage:i, alive, 784 days
2411.0
TCGA-CC-A7IL-01A
61 years, male, asian, stage:iiia, dead, 278 days
2410.3
TCGA-DD-A73A-01A
71 years, male, white, stage:i, alive, 728 days
2410.0
TCGA-PD-A5DF-01A
58 years, female, white, stage:iiib, dead, 639 days
2403.2
TCGA-DD-AAW0-01A
54 years, male, asian, stage:i, alive, 2015 days
2391.3
TCGA-ZP-A9D2-01A
51 years, male, white, dead, 765 days
2388.8
TCGA-CC-A9FW-01A
68 years, male, asian, stage:iiia, alive, 248 days
2379.1
TCGA-DD-AAEE-01A
55 years, male, asian, stage:i, alive, 810 days
2372.3
TCGA-DD-AADM-01A
58 years, male, asian, stage:ii, dead, 12 days
2341.8
TCGA-UB-A7MF-01A
57 years, male, white, stage:iiia, dead, 214 days
2341.1
TCGA-DD-A115-01A
53 years, male, white, stage:iiia, dead, 2542 days
2337.4
TCGA-EP-A3JL-01A
76 years, male, white, stage:i, alive, 303 days
2320.2
TCGA-RC-A7SF-01A
66 years, male, asian, stage:i, alive, 579 days
2315.7
TCGA-WX-AA46-01A
62 years, male, white, stage:ii, alive, 756 days
2309.1
TCGA-2Y-A9GW-01A
64 years, male, white, stage:i, dead, 1271 days
2308.2
TCGA-ZS-A9CD-01A
73 years, male, white, stage:ii, dead, 1386 days
2295.8
TCGA-G3-A6UC-01A
65 years, male, white, stage:iiib, alive, 671 days
2286.7
TCGA-DD-AAVW-01A
35 years, male, asian, stage:i, alive, 2317 days
2285.3
TCGA-DD-A3A2-01A
76 years, female, white, stage:i, dead, 2131 days
2271.7
TCGA-DD-AAVU-01A
46 years, male, asian, stage:ii, alive, 2202 days
2258.1
TCGA-DD-A1EJ-01A
71 years, female, white, stage:iiic, dead, 1005 days
2238.4
TCGA-DD-A3A7-01A
67 years, male, stage:iiib, dead, 419 days
2229.6
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:ii, dead, 848 days
2203.6
TCGA-DD-A1EK-01A
64 years, female, white, stage:ivb, dead, 558 days
2189.1
TCGA-MI-A75E-01A
61 years, male, white, stage:iiic, alive, 507 days
2188.4
TCGA-DD-AADG-01A
70 years, male, asian, stage:iiia, alive, 1145 days
2170.9
TCGA-G3-A25X-01A
73 years, male, asian, stage:ii, alive, 1779 days
2166.4
TCGA-BC-A10X-01A
52 years, female, white, stage:iiia, dead, 770 days
2145.7
TCGA-DD-AAVX-01A
38 years, male, asian, stage:ii, alive, 1570 days
2134.4
TCGA-G3-A3CH-01A
53 years, male, asian, stage:iiia, alive, 780 days
2126.3
TCGA-DD-AAE3-01A
50 years, male, asian, stage:i, alive, 566 days
2091.7
TCGA-4R-AA8I-01A
66 years, male, white, stage:ii, dead, 262 days
2078.1
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:i, alive, 1452 days
2057.1
TCGA-CC-A8HV-01A
51 years, female, asian, stage:ii, dead, 279 days
2051.7
TCGA-DD-AAE2-01A
51 years, male, asian, stage:i, alive, 638 days
2049.6
TCGA-MI-A75I-01A
61 years, male, black or african american, alive, 630 days
2048.0
TCGA-CC-A3MB-01A
36 years, male, asian, stage:iiia, dead, 315 days
2019.7
TCGA-G3-AAV5-01A
67 years, male, white, stage:ii, alive, 354 days
2018.9
TCGA-ZS-A9CF-01A
64 years, male, white, stage:ii, alive, 2412 days
2004.2
TCGA-BD-A3ER-01A
62 years, male, white, stage:ii, alive, 1115 days
1996.0
TCGA-LG-A6GG-01A
79 years, female, white, stage:ii, alive, 387 days
1994.0
TCGA-DD-AADC-01A
53 years, male, asian, stage:i, dead, 425 days
1992.8
TCGA-DD-A3A1-01A
65 years, male, stage:iiia, dead, 233 days
1990.1
TCGA-DD-AADO-01A
55 years, male, asian, stage:i, alive, 453 days
1989.2
TCGA-DD-AADQ-01A
59 years, male, asian, stage:ii, alive, 436 days
1987.3
TCGA-FV-A3R2-01A
75 years, male, white, stage:i, dead, 194 days
1986.7
TCGA-DD-AADR-01A
58 years, male, asian, stage:i, alive, 2028 days
1978.7
TCGA-DD-A116-01A
68 years, male, asian, stage:iiia, dead, 1622 days
1975.1
TCGA-DD-A1EG-01A
77 years, male, white, stage:i, dead, 1372 days
1973.1
TCGA-DD-AADD-01A
51 years, male, asian, stage:i, alive, 1231 days
1972.9
TCGA-CC-A7IF-01A
59 years, male, asian, stage:iiia, dead, 649 days
1970.9
TCGA-DD-AAVR-01A
44 years, male, asian, stage:i, alive, 2513 days
1963.2
TCGA-DD-AACK-01A
70 years, male, asian, stage:i, alive, 9 days
1961.0
TCGA-KR-A7K7-01A
61 years, female, white, stage:ii, alive, 951 days
1950.3
TCGA-DD-AAEG-01A
59 years, female, asian, stage:i, alive, 719 days
1947.1
TCGA-DD-A119-01A
40 years, male, asian, stage:iv, dead, 223 days
1944.3
TCGA-RC-A6M4-01A
74 years, female, white, stage:iiia, alive, 22 days
1939.4
TCGA-CC-A5UE-01A
48 years, male, asian, stage:iiib, dead, 272 days
1919.7
TCGA-G3-A5SK-01A
58 years, male, white, stage:i, alive, 744 days
1918.0
TCGA-DD-A4NV-01A
61 years, male, white, stage:iiia, alive, 2398 days
1917.8
TCGA-ED-A627-01A
74 years, male, white, stage:i, alive, 423 days
1915.0
TCGA-UB-A7MB-01A
24 years, male, white, stage:ii, alive, 601 days
1914.1
TCGA-WJ-A86L-01A
68 years, female, white, stage:i, alive, 345 days
1905.2
TCGA-BC-4073-01B
73 years, male, white, stage:iiia, alive, 849 days
1893.5
TCGA-GJ-A9DB-01A
68 years, male, white, stage:i, dead, 67 days
1888.6
TCGA-BC-A112-01A
80 years, male, white, dead, 153 days
1888.4
TCGA-UB-AA0V-01A
69 years, female, white, stage:i, alive, 314 days
1882.1
TCGA-DD-A3A8-01A
75 years, male, white, stage:ii, dead, 11 days
1874.5
TCGA-RC-A7SH-01A
42 years, male, asian, stage:ii, alive, 468 days
1872.2
TCGA-GJ-A6C0-01A
75 years, female, white, stage:ii, dead, 31 days
1871.3
TCGA-2Y-A9H1-01A
58 years, male, white, stage:i, dead, 1229 days
1866.4
TCGA-DD-AAE4-01A
49 years, female, asian, stage:i, alive, 608 days
1820.1
TCGA-DD-AAEK-01A
51 years, male, asian, stage:ii, alive, 1067 days
1797.9
TCGA-DD-A4NJ-01A
54 years, female, white, stage:ii, alive, 928 days
1791.2
TCGA-ZP-A9D4-01A
64 years, female, white, alive, 395 days
1787.5
TCGA-RC-A6M6-01A
75 years, male, white, stage:ii, alive, 9 days
1777.7
TCGA-G3-A7M6-01A
60 years, female, white, stage:i, alive, 632 days
1770.0
TCGA-DD-A1ED-01A
68 years, male, white, stage:i, alive, 2301 days
1767.3
TCGA-BC-A3KF-01A
66 years, female, white, stage:i, alive, 8 days
1757.0
TCGA-DD-AACE-01A
62 years, male, asian, stage:i, alive, 2184 days
1713.2
TCGA-DD-AAD0-01A
73 years, female, asian, stage:i, alive, 137 days
1712.5
TCGA-DD-AAE6-01A
59 years, female, asian, stage:i, alive, 141 days
1705.5
TCGA-HP-A5MZ-01A
62 years, male, stage:i, dead, 91 days
1702.2
TCGA-DD-A4NI-01A
67 years, male, white, stage:ii, alive, 816 days
1698.2
TCGA-RC-A7SB-01A
53 years, male, asian, stage:ii, alive, 588 days
1694.3
TCGA-DD-AACH-01A
69 years, male, asian, stage:ii, dead, 195 days
1683.7
TCGA-DD-A4NR-01A
85 years, female, white, stage:i, dead, 9 days
1678.6
TCGA-BC-4072-01B
74 years, female, white, stage:iiia, dead, 1490 days
1677.3
TCGA-2Y-A9H0-01A
49 years, male, white, stage:iiia, alive, 3675 days
1658.5
TCGA-CC-A7IH-01A
58 years, male, asian, stage:iiia, alive, 365 days
1635.1
TCGA-BC-A10R-01A
66 years, female, white, dead, 308 days
1607.7
TCGA-EP-A26S-01A
70 years, male, white, stage:i, alive, 608 days
1600.3
TCGA-DD-A1EF-01A
57 years, female, white, stage:i, dead, 394 days
1599.1
TCGA-DD-AACT-01A
69 years, female, asian, stage:i, alive, 1562 days
1590.7
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:i, alive, 519 days
1589.8
TCGA-DD-AAE0-01A
45 years, female, asian, stage:iiia, alive, 555 days
1572.1
TCGA-DD-A1EC-01A
20 years, female, white, stage:i, alive, 602 days
1565.3
TCGA-MI-A75C-01A
64 years, male, white, stage:i, alive, 291 days
1558.5
TCGA-G3-A25S-01A
64 years, male, white, stage:i, dead, 416 days
1545.7
TCGA-NI-A8LF-01A
74 years, male, white, stage:i, alive, 799 days
1530.2
TCGA-DD-AACP-01A
65 years, male, asian, stage:i, alive, 415 days
1521.2
TCGA-2Y-A9GX-01A
68 years, male, white, stage:i, alive, 2442 days
1516.0
TCGA-DD-AAW2-01A
69 years, male, asian, stage:i, alive, 1855 days
1515.0
TCGA-DD-AADF-01A
64 years, female, asian, stage:i, dead, 115 days
1510.5
TCGA-DD-A39X-01A
78 years, female, white, stage:i, dead, 1694 days
1507.4
TCGA-BC-A8YO-01A
66 years, female, white, stage:iiic, alive, 562 days
1504.7
TCGA-WX-AA44-01A
64 years, female, white, stage:i, alive, 615 days
1495.3
TCGA-G3-A5SL-01A
70 years, male, white, stage:ii, alive, 621 days
1493.3
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:ii, alive, 594 days
1476.2
TCGA-DD-AACQ-01A
50 years, male, asian, stage:ii, dead, 432 days
1469.2
TCGA-CC-5263-01A
35 years, male, asian, stage:iiia, dead, 129 days
1446.4
TCGA-2Y-A9HA-01A
70 years, male, white, stage:ii, dead, 36 days
1445.7
TCGA-DD-AAW3-01A
69 years, male, asian, stage:i, alive, 1633 days
1434.4
TCGA-XR-A8TD-01A
49 years, female, white, stage:iiib, alive, 1030 days
1428.0
TCGA-ED-A7XP-01A
53 years, female, asian, stage:ii, alive, 400 days
1419.9
TCGA-DD-A4NS-01A
62 years, female, white, stage:i, dead, 2456 days
1414.5
TCGA-DD-AAVY-01A
56 years, male, asian, stage:iiia, alive, 1970 days
1400.7
TCGA-ED-A5KG-01A
60 years, female, asian, stage:ii, alive, 854 days
1397.2
TCGA-CC-A7IG-01A
47 years, male, asian, stage:ii, dead, 299 days
1394.4
TCGA-EP-A12J-01A
63 years, male, black or african american, stage:i, alive, 570 days
1388.6
TCGA-KR-A7K8-01A
57 years, male, stage:i, alive, 906 days
1385.8
TCGA-G3-AAV2-01A
50 years, male, white, stage:i, alive, 372 days
1385.0
TCGA-CC-A5UC-01A
63 years, male, asian, stage:iiia, dead, 347 days
1373.5
TCGA-G3-A7M9-01A
70 years, male, white, stage:iiib, dead, 56 days
1360.9
TCGA-DD-AACD-01A
48 years, male, asian, stage:i, dead, 381 days
1350.0
TCGA-DD-AADN-01A
59 years, male, asian, stage:i, alive, 898 days
1342.1
TCGA-CC-A8HU-01A
39 years, female, asian, stage:iiia, dead, 344 days
1341.6
TCGA-GJ-A3OU-01A
59 years, male, white, stage:i, alive, 879 days
1334.2
TCGA-BC-A10T-01A
76 years, male, white, dead, 837 days
1334.0
TCGA-DD-A114-01A
42 years, male, black or african american, stage:ii, dead, 1149 days
1332.2
TCGA-DD-A4NQ-01A
60 years, male, white, stage:ii, dead, 373 days
1324.1
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:ii, alive, 94 days
1323.2
TCGA-DD-AAEB-01A
60 years, male, asian, stage:i, alive, 478 days
1311.7
TCGA-DD-AACG-01A
52 years, male, asian, stage:ii, dead, 469 days
1287.9
TCGA-EP-A3RK-01A
73 years, male, white, stage:iiia, alive, 363 days
1287.4
TCGA-DD-A1EA-01A
68 years, male, asian, stage:ii, alive, 2415 days
1269.7
TCGA-RC-A6M5-01A
20 years, female, white, stage:iva, alive, 15 days
1258.3
TCGA-ZS-A9CG-01A
55 years, male, white, stage:ii, alive, 341 days
1240.1
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:ii, alive, 1098 days
1212.7
TCGA-CC-5262-01A
67 years, male, asian, stage:iiic, dead, 103 days
1211.0
TCGA-DD-AADB-01A
51 years, male, asian, stage:i, alive, 1242 days
1202.8
TCGA-DD-AADL-01A
58 years, male, asian, stage:i, alive, 636 days
1195.6
TCGA-CC-5258-01A
48 years, male, asian, stage:ii, dead, 129 days
1191.8
TCGA-KR-A7K0-01A
65 years, male, white, stage:i, dead, 65 days
1185.1
TCGA-DD-A4NH-01A
65 years, female, white, stage:iiib, alive, 917 days
1163.5
TCGA-DD-A4NE-01A
75 years, female, white, stage:iiia, dead, 660 days
1163.3
TCGA-DD-A39V-01A
77 years, male, white, stage:ii, dead, 643 days
1131.1
TCGA-BC-A10W-01A
50 years, male, asian, dead, 91 days
1114.8
TCGA-5C-A9VG-01A
58 years, male, white, stage:ii, alive, 328 days
1113.9
TCGA-DD-AADU-01A
60 years, male, asian, stage:ii, alive, 554 days
1108.1
TCGA-BC-A3KG-01A
68 years, female, white, stage:ii, alive, 680 days
1095.4
TCGA-G3-AAV6-01A
53 years, female, white, stage:iiia, dead, 65 days
1093.1
TCGA-LG-A9QC-01A
48 years, male, white, stage:i, alive, 425 days
1089.1
TCGA-ED-A459-01A
47 years, male, asian, stage:ii, alive, 910 days
1086.5
TCGA-G3-A3CK-01A
61 years, male, asian, stage:i, alive, 585 days
1084.2
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:i, dead, 52 days
1083.9
TCGA-BC-A10Z-01A
62 years, female, white, stage:i, dead, 34 days
1076.9
TCGA-WX-AA47-01A
33 years, female, white, stage:iiia, dead, 556 days
1047.6
TCGA-DD-AACZ-01A
63 years, female, asian, stage:i, dead, 171 days
1024.0
TCGA-MI-A75H-01A
77 years, male, white, alive, 747 days
1011.0
TCGA-G3-A25U-01A
63 years, female, asian, stage:i, alive, 1636 days
1006.9
TCGA-BC-A10U-01A
69 years, male, white, dead, 837 days
988.3
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:i, alive, 12 days
985.5
TCGA-2Y-A9GY-01A
64 years, female, white, stage:ii, dead, 757 days
964.3
TCGA-K7-AAU7-01A
61 years, male, white, stage:ii, alive, 359 days
950.0
TCGA-DD-AAW1-01A
55 years, male, asian, stage:iiia, alive, 1989 days
936.4
TCGA-CC-A7IE-01A
57 years, male, asian, stage:iiia, dead, 217 days
935.5
TCGA-DD-A4NB-01A
25 years, male, white, stage:i, alive, 989 days
932.6
TCGA-DD-AAD6-01A
66 years, male, asian, stage:iiia, alive, 672 days
851.7
TCGA-CC-A7IK-01A
59 years, male, asian, stage:iiia, dead, 262 days
844.2
TCGA-DD-A4NG-01A
77 years, male, white, stage:iiia, dead, 802 days
839.4
TCGA-DD-AAE9-01A
69 years, male, asian, stage:i, alive, 722 days
835.9
TCGA-G3-AAV1-01A
51 years, male, asian, stage:iiic, dead, 359 days
831.7
TCGA-G3-AAV3-01A
58 years, female, white, stage:ii, alive, 412 days
804.1
TCGA-5R-AA1D-01A
17 years, female, white, stage:iiia, alive, 449 days
788.8
TCGA-DD-AAVP-01A
48 years, male, asian, stage:i, alive, 2752 days
787.8
TCGA-DD-A4NA-01A
67 years, female, white, stage:iiic, alive, 1008 days
722.1
TCGA-DD-A3A4-01A
37 years, male, white, stage:iiia, dead, 612 days
667.4
TCGA-XR-A8TE-01A
16 years, male, white, stage:iiia, alive, 925 days
661.7
TCGA-CC-A8HT-01A
74 years, male, asian, stage:iiia, dead, 140 days
661.4
TCGA-DD-A1EE-01A
73 years, male, white, stage:iiia, dead, 349 days
661.1
TCGA-DD-AACB-01A
74 years, female, asian, stage:i, alive, 2324 days
632.6
TCGA-G3-A3CG-01A
80 years, male, white, stage:i, alive, 673 days
623.1
TCGA-DD-AACA-01A
65 years, male, asian, stage:i, alive, 2301 days
621.6
TCGA-ED-A97K-01A
54 years, male, asian, stage:iiia, alive, 6 days
618.9
TCGA-G3-A25T-01A
45 years, female, white, stage:iiia, alive, 1553 days
616.4
TCGA-G3-AAV4-01A
83 years, female, white, stage:i, dead, 27 days
614.2
TCGA-WQ-A9G7-01A
female, white, alive, 30 days
483.1
TCGA-CC-A7II-01A
55 years, male, asian, stage:iiia, alive, 399 days
457.0
TCGA-2Y-A9H2-01A
64 years, female, white, stage:i, alive, 1731 days
456.0
TCGA-DD-AACX-01A
66 years, male, asian, stage:ii, alive, 170 days
451.8
TCGA-DD-AACL-01A
66 years, female, asian, stage:i, dead, 107 days
443.4
TCGA-G3-AAV7-01A
38 years, male, asian, stage:ii, alive, 361 days
425.3
TCGA-DD-A4NF-01A
72 years, male, white, stage:i, alive, 942 days
408.1
TCGA-DD-A73E-01A
66 years, male, white, stage:i, alive, 44 days
399.9
TCGA-DD-A39W-01A
29 years, female, white, stage:iii, dead, 827 days
367.8
TCGA-CC-A5UD-01A
45 years, male, asian, stage:iiia, dead, 304 days
362.9
TCGA-BC-A10Q-01A
72 years, female, white, dead, 1135 days
352.9
TCGA-CC-A3MA-01A
61 years, male, asian, stage:iiia, dead, 303 days
352.3
TCGA-DD-A39Y-01A
67 years, male, asian, stage:i, dead, 171 days
345.8
TCGA-DD-AAC8-01A
72 years, male, asian, stage:i, dead, 16 days
319.6
TCGA-ED-A7PX-01A
48 years, female, asian, stage:ii, alive, 6 days
313.1
TCGA-CC-5260-01A
61 years, female, asian, stage:iiic, dead, 87 days
293.5
TCGA-ED-A82E-01A
60 years, female, asian, stage:iiia, alive, 408 days
285.1
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:ii, dead, 415 days
276.1
TCGA-5R-AA1C-01A
57 years, male, white, stage:ii, alive, 520 days
271.3
TCGA-MR-A8JO-01A
34 years, male, white, stage:i, alive, 330 days
244.6
TCGA-CC-A1HT-01A
50 years, male, asian, stage:iiia, dead, 101 days
209.8
TCGA-DD-AA3A-01A
81 years, female, white, stage:i, dead, 410 days
170.7
TCGA-DD-AAD5-01A
54 years, male, asian, stage:i, alive, 1345 days
156.5
TCGA-YA-A8S7-01A
69 years, male, white, stage:iiia, dead, 412 days
111.5
TCGA-FV-A3I0-01A
76 years, female, white, stage:ii, alive, 848 days
101.7
TCGA-DD-A3A6-01A
72 years, female, white, stage:ii, dead, 3258 days
7.2
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:ii, alive, 382 days
1.2
TCGA-CC-A3M9-01A
45 years, male, asian, stage:iiia, dead, 300 days
1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
