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  • PMP22
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:113.6 nTPM
HPA:113.6 nTPM
GTEx:106.5 nTPM
FANTOM5:179.8 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 113.6
Sample id Sample description nTPM
Amygdala
nTPM: 113.6
2514 Male, age 75, right hemisphere 123.9
2814 Male, age 76, right hemisphere 121.9
2517 Female, age 94, left hemisphere 109.1
2695 Female, age 67, right hemisphere 108.5
1987 Female, age 91, left hemisphere 104.7
Basal amygdala
nTPM: 100.8
2609 Male, age 75, right hemisphere 111.8
1955 Male, age 76, both hemispheres 104.3
2110 Male, age 80, left hemisphere 103.4
2685 Female, age 94, left hemisphere 98.4
2243 Female, age 91, right hemisphere 93.4
2827 Female, age 67, right hemisphere 93.4
Central amygdala
nTPM: 106.2
1905 Male, age 76, both hemispheres 112.1
2515 Male, age 75, right hemisphere 112.1
2826 Female, age 94, left hemisphere 106.4
2701 Female, age 91, right hemisphere 102.3
2239 Male, age 80, left hemisphere 98.3
Corticomedial amygdala
nTPM: 97.0
2428 Male, age 75, right hemisphere 113.6
2429 Female, age 94, left hemisphere 103.6
2240 Male, age 76, both hemispheres 100.8
2829 Male, age 80, left hemisphere 92.2
2242 Female, age 91, right hemisphere 86.2
2535 Female, age 67, right hemisphere 85.8
Lateral amygdala
nTPM: 105.9
2516 Male, age 75, right hemisphere 116.9
1883 Male, age 76, both hemispheres 111.1
2256 Male, age 80, left hemisphere 108.4
2534 Female, age 94, left hemisphere 102.3
2255 Female, age 91, right hemisphere 100.0
2830 Female, age 67, right hemisphere 96.8
Stria terminalis, bed nucleus
nTPM: 88.3
1974 Female, age 91, both hemispheres 90.5
2486 Female, age 94, both hemispheres 87.6
2201 Male, age 74, unknown 86.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 106.5
Samples: 152

Max nTPM: 277.5
Min nTPM: 47.3
Std nTPM: 36.1
Median nTPM: 99.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 277.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 228.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 227.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 199.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 177.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 172.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 170.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 169.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 165.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 165.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 165.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 161.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 158.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 158.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 154.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 154.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 152.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 151.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 151.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 150.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 145.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 144.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 140.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 140.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 140.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 139.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 136.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 134.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 133.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 133.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 132.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 128.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 127.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 127.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 126.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 126.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 124.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 124.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 123.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 122.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 121.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 120.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 119.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 117.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 117.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 117.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 116.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 115.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 115.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 114.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 112.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 112.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 112.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 111.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 109.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 109.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 109.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 109.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 108.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 108.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 108.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 105.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 105.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 105.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 104.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 103.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 103.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 103.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 102.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 101.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 101.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 100.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 100.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 99.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 98.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 98.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 98.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 98.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 98.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 97.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 97.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 96.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 96.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 96.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 96.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 95.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 94.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 93.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 92.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 91.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 91.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 90.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 90.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 89.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 87.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 87.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 86.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 86.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 85.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 85.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 84.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 83.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 83.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 83.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 83.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 82.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 82.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 82.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 82.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 81.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 81.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 80.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 79.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 79.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 79.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 78.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 78.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 76.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 75.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 74.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 73.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 73.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 72.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 72.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 72.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 71.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 71.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 70.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 70.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 69.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 69.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 68.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 68.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 68.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 65.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 65.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 63.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 60.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 60.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 56.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 55.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 54.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 54.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 52.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 47.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 179.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 179.8
FF:10151-102I7 76 years, female 179.8

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