MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:144.2 nTPM
HPA:144.2 nTPM
GTEx:147.2 nTPM
FANTOM5:729.6 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 144.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.0
1870 Female, age 42, unknown 151.1
2411 Female, age 72, unknown 146.3
1830 Male, age 51, unknown 144.1
1833 Male, age 53, unknown 142.0
2019 Male, age 18, unknown 134.0
2828 Female, age 72, unknown 118.4
2586 Male, age 75, left hemisphere 107.9
1827 Male, age 72, unknown 106.4
2219 Male, age 76, both hemispheres 100.6
2666 Male, age 74, left hemisphere 99.5
Dorsal raphe nucleus
nTPM: 111.9
2750 Male, age 76, both hemispheres 134.5
2016 Female, age 72, unknown 120.4
1828 Male, age 53, unknown 114.3
2047 Male, age 72, unknown 96.3
2298 Female, age 72, unknown 94.3
Inferior colliculus
nTPM: 106.1
1848 Female, age 42, unknown 109.5
1890 Male, age 53, unknown 106.3
2849 Male, age 72, unknown 104.9
2097 Female, age 72, unknown 103.8
Median raphe nucleus
nTPM: 107.2
2220 Male, age 76, midline 107.2
Pedunculopontine tegmental nucleus
nTPM: 119.2
2334 Male, age 80, both hemispheres 127.5
2338 Male, age 61, both hemispheres 115.1
1921 Female, age 85, both hemispheres 115.0
Periaquaductal grey, anterior
nTPM: 98.7
2502 Female, age 75, unknown 104.6
1947 Male, age 18, unknown 100.0
1795 Male, age 51, unknown 91.4
Periaquaductal grey, dorsal
nTPM: 100.2
2464 Female, age 72, unknown 113.0
2850 Male, age 76, both hemispheres 107.1
1831 Male, age 72, unknown 96.4
1840 Male, age 53, unknown 84.3
Periaquaductal grey, lateral
nTPM: 103.9
2053 Male, age 18, unknown 104.9
2140 Male, age 76, both hemispheres 104.6
2272 Male, age 74, both hemispheres 102.3
Pretectal area
nTPM: 105.1
1815 Male, age 53, unknown 121.4
2316 Male, age 76, right hemisphere 117.6
2825 Male, age 18, unknown 109.4
1817 Female, age 42, unknown 109.3
2667 Female, age 75, unknown 107.4
2273 Male, age 74, both hemispheres 106.8
2007 Male, age 72, unknown 103.5
2407 Male, age 75, both hemispheres 102.8
2224 Female, age 72, unknown 100.2
1944 Female, age 72, unknown 90.2
1816 Male, age 51, unknown 87.0
Red nucleus
nTPM: 144.2
1821 Female, age 72, unknown 169.2
1865 Male, age 51, unknown 164.7
1904 Male, age 53, unknown 158.1
2769 Male, age 72, unknown 152.6
1954 Female, age 42, unknown 150.8
2227 Male, age 72, unknown 149.6
2823 Male, age 76, right hemisphere 149.6
2503 Female, age 72, unknown 148.2
2785 Male, age 18, unknown 144.3
2588 Male, age 74, left hemisphere 116.4
2725 Female, age 75, unknown 115.9
2584 Male, age 75, left hemisphere 110.9
Substantia nigra
nTPM: 108.6
2409 Female, age 72, unknown 121.5
1851 Male, age 51, unknown 117.5
1889 Female, age 72, unknown 116.0
2583 Male, age 75, right hemisphere 113.5
2590 Female, age 75, unknown 111.8
2699 Male, age 18, unknown 111.5
2241 Male, age 72, unknown 104.0
1941 Male, age 53, unknown 101.7
1916 Female, age 42, unknown 99.4
2665 Male, age 74, both hemispheres 89.3
Superior colliculus
nTPM: 116.7
1995 Male, age 72, unknown 153.1
1913 Female, age 42, unknown 150.9
2587 Male, age 74, left hemisphere 122.8
1895 Male, age 76, right hemisphere 122.2
1839 Male, age 51, unknown 117.1
2668 Female, age 75, unknown 116.2
1796 Male, age 53, unknown 103.5
2087 Female, age 72, unknown 96.3
2261 Male, age 18, unknown 93.2
2664 Male, age 75, both hemispheres 92.1
Ventral tegmental area
nTPM: 117.2
2410 Female, age 72, unknown 132.3
2223 Female, age 72, unknown 126.9
1915 Female, age 42, unknown 111.9
2021 Male, age 53, unknown 111.7
1942 Male, age 51, unknown 110.3
2218 Male, age 76, both hemispheres 110.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 147.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 147.2
Samples: 139

Max nTPM: 418.1
Min nTPM: 62.5
Std nTPM: 67.9
Median nTPM: 126.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 418.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 362.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 337.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 332.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 322.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 300.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 298.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 298.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 291.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 261.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 260.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 729.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 729.6
FF:10158-103A5 76 years, female 729.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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