BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:14.1 nTPM
HPA:14.1 nTPM
GTEx:13.6 nTPM
FANTOM5:88.7 Scaled Tags Per Million
Pig:54.4 nTPM
Mouse:57.4 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036483Antibody HPA036484
Glial cells MediumNot detected
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.8
2481 Female, age 94, left hemisphere 16.7
1857 Female, age 85, left hemisphere 16.6
2846 Female, age 79, unknown 14.6
2288 Male, age 75, left hemisphere 14.0
1854 Male, age 80, left hemisphere 12.7
2289 Male, age 61, right hemisphere 12.2
2290 Female, age 72, unknown 12.2
1781 Male, age 74, unknown 11.5
Claustrum
nTPM: 11.5
2392 Female, age 94, both hemispheres 13.5
1956 Male, age 74, unknown 13.0
2196 Female, age 79, unknown 12.3
2491 Male, age 75, both hemispheres 11.5
2568 Male, age 61, both hemispheres 11.5
2198 Male, age 80, both hemispheres 11.4
2284 Female, age 91, both hemispheres 10.7
2645 Female, age 72, unknown 10.0
2292 Female, age 85, both hemispheres 9.5
Globus pallidus, externus
nTPM: 12.1
2772 Female, age 79, unknown 13.7
2646 Male, age 61, right hemisphere 12.6
1996 Male, age 80, right hemisphere 12.3
2395 Male, age 75, both hemispheres 11.7
2567 Female, age 72, unknown 10.0
Globus pallidus, internus
nTPM: 14.1
2287 Male, age 75, right hemisphere 17.0
2483 Female, age 94, right hemisphere 16.7
1818 Male, age 74, unknown 14.6
2037 Male, age 80, right hemisphere 14.2
2778 Female, age 91, both hemispheres 13.9
2566 Female, age 72, unknown 12.9
2111 Female, age 85, right hemisphere 9.2
Nucleus accumbens
nTPM: 13.7
2391 Female, age 94, left hemisphere 17.3
2698 Female, age 72, unknown 16.9
1856 Female, age 91, right hemisphere 16.1
1806 Female, age 85, left hemisphere 14.4
2286 Male, age 75, left hemisphere 13.2
1783 Male, age 74, unknown 12.2
2732 Male, age 80, right hemisphere 10.1
2824 Male, age 61, right hemisphere 9.6
Nucleus basalis of Meynert
nTPM: 11.9
2821 Male, age 75, both hemispheres 12.9
2484 Female, age 94, left hemisphere 12.4
2393 Male, age 80, right hemisphere 11.2
2569 Male, age 61, both hemispheres 11.1
Nucleus of the diagonal band
nTPM: 12.3
1812 Female, age 91, both hemispheres 15.4
2775 Male, age 80, right hemisphere 13.5
1979 Male, age 74, unknown 11.6
2195 Female, age 85, both hemispheres 10.9
2029 Male, age 61, right hemisphere 10.3
Olfactory tubercle
nTPM: 13.1
2856 Male, age 75, right hemisphere 14.9
1998 Female, age 91, both hemispheres 13.5
1846 Male, age 80, right hemisphere 13.1
2487 Female, age 94, left hemisphere 11.1
Putamen
nTPM: 12.2
2482 Female, age 94, left hemisphere 14.8
1937 Female, age 91, right hemisphere 14.1
1838 Male, age 80, right hemisphere 13.1
1829 Male, age 74, unknown 11.9
2647 Male, age 75, left hemisphere 11.1
2466 Female, age 79, unknown 10.6
2489 Female, age 72, unknown 9.6
Septal nuclei
nTPM: 11.5
2031 Female, age 72, unknown 13.4
2009 Female, age 91, both hemispheres 13.1
1960 Male, age 74, unknown 11.6
2629 Female, age 94, right hemisphere 10.9
2394 Male, age 61, left hemisphere 10.8
2199 Male, age 80, right hemisphere 10.6
2059 Female, age 85, both hemispheres 9.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.4
Samples: 246

Max nTPM: 25.1
Min nTPM: 7.6
Std nTPM: 2.1
Median nTPM: 12.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 25.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 20.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 19.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 18.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 18.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 17.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 17.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 17.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 16.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 16.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 16.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.6
Samples: 246

Max nTPM: 24.1
Min nTPM: 6.9
Std nTPM: 2.3
Median nTPM: 13.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 24.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 22.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 18.8
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 18.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 18.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 18.6
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 18.3
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 18.3
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 18.2
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 18.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 17.8
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Brain - Putamen (basal ganglia)
Average nTPM: 11.6
Samples: 205

Max nTPM: 18.7
Min nTPM: 5.8
Std nTPM: 1.8
Median nTPM: 11.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 18.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 18.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 17.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 16.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 15.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 15.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 15.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 14.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 14.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 14.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 14.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 48.7
FF:10164-103B2 76 years, female 48.7
Globus pallidus
Scaled Tags Per Million: 88.7
FF:10175-103C4 60 years, female 127.0
FF:10161-103A8 76 years, female 50.4
Nucleus accumbens
Scaled Tags Per Million: 42.6
FF:10037-101F1 23-56 years, mixed 42.6
Putamen
Scaled Tags Per Million: 64.9
FF:10176-103C5 60 years, female 64.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 54.4
Pig sample Sample description nTPM
Caudate
nTPM: 41.4
Samples: 4

Max nTPM: 47.3
Min nTPM: 39.3
Sample A Female 39.3
Sample B Female 39.3
Sample C Male 47.3
Sample D Male 39.8
Putamen
nTPM: 54.4
Samples: 4

Max nTPM: 79.2
Min nTPM: 41.7
Sample A Female 41.7
Sample B Female 47.2
Sample C Male 79.2
Sample D Male 49.3
Septum
nTPM: 40.6
Samples: 4

Max nTPM: 48.2
Min nTPM: 37.2
Sample A Female 39.4
Sample B Female 37.6
Sample C Male 48.2
Sample D Male 37.2
Ventral pallidum
nTPM: 39.9
Samples: 4

Max nTPM: 43.7
Min nTPM: 36.3
Sample A Female 38.9
Sample B Female 43.7
Sample C Male 40.8
Sample D Male 36.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 57.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 49.2
Samples: 4

Max nTPM: 55.6
Min nTPM: 42.7
Sample A Male 44.5
Sample B Male 42.7
Sample C Female 55.6
Sample D Female 53.8
Septum
nTPM: 57.4
Samples: 4

Max nTPM: 59.4
Min nTPM: 53.8
Sample A Male 59.4
Sample B Male 53.8
Sample C Female 57.9
Sample D Female 58.4
Ventral forebrain
nTPM: 56.6
Samples: 4

Max nTPM: 60.7
Min nTPM: 51.2
Sample A Male 54.5
Sample B Male 60.1
Sample C Female 51.2
Sample D Female 60.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
74357720 Antisense, RP_060119_03_C04, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
74357720 Antisense, RP_060119_03_C04, Mouse strain C57BL/6J (56 days, male) 0.1

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