MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:96.0 nTPM
HPA:96.0 nTPM
GTEx:106.5 nTPM
FANTOM5:288.7 Scaled Tags Per Million
Pig:8.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 96.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.2
2019 Male, age 18, unknown 94.1
1870 Female, age 42, unknown 90.1
1833 Male, age 53, unknown 88.6
1830 Male, age 51, unknown 86.9
1827 Male, age 72, unknown 86.1
2411 Female, age 72, unknown 84.1
2666 Male, age 74, left hemisphere 82.7
2828 Female, age 72, unknown 80.4
2219 Male, age 76, both hemispheres 76.0
2586 Male, age 75, left hemisphere 72.5
Dorsal raphe nucleus
nTPM: 86.8
2750 Male, age 76, both hemispheres 88.8
1828 Male, age 53, unknown 88.1
2298 Female, age 72, unknown 87.9
2047 Male, age 72, unknown 85.6
2016 Female, age 72, unknown 83.5
Inferior colliculus
nTPM: 89.0
2097 Female, age 72, unknown 92.5
2849 Male, age 72, unknown 88.4
1848 Female, age 42, unknown 87.6
1890 Male, age 53, unknown 87.6
Median raphe nucleus
nTPM: 96.0
2220 Male, age 76, midline 96.0
Pedunculopontine tegmental nucleus
nTPM: 94.3
2334 Male, age 80, both hemispheres 100.7
2338 Male, age 61, both hemispheres 99.8
1921 Female, age 85, both hemispheres 82.5
Periaquaductal grey, anterior
nTPM: 82.3
2502 Female, age 75, unknown 84.8
1947 Male, age 18, unknown 83.3
1795 Male, age 51, unknown 79.0
Periaquaductal grey, dorsal
nTPM: 88.5
2850 Male, age 76, both hemispheres 102.4
1831 Male, age 72, unknown 88.1
2464 Female, age 72, unknown 82.0
1840 Male, age 53, unknown 81.4
Periaquaductal grey, lateral
nTPM: 90.2
2272 Male, age 74, both hemispheres 96.2
2140 Male, age 76, both hemispheres 91.4
2053 Male, age 18, unknown 83.1
Pretectal area
nTPM: 93.1
1817 Female, age 42, unknown 106.4
1944 Female, age 72, unknown 101.2
2007 Male, age 72, unknown 99.6
1816 Male, age 51, unknown 98.9
1815 Male, age 53, unknown 95.2
2273 Male, age 74, both hemispheres 95.1
2667 Female, age 75, unknown 92.4
2224 Female, age 72, unknown 89.8
2407 Male, age 75, both hemispheres 83.9
2825 Male, age 18, unknown 81.8
2316 Male, age 76, right hemisphere 80.3
Red nucleus
nTPM: 88.3
1821 Female, age 72, unknown 98.5
2785 Male, age 18, unknown 95.0
1904 Male, age 53, unknown 90.9
1954 Female, age 42, unknown 90.5
1865 Male, age 51, unknown 89.2
2503 Female, age 72, unknown 89.2
2823 Male, age 76, right hemisphere 89.0
2725 Female, age 75, unknown 88.6
2584 Male, age 75, left hemisphere 86.7
2227 Male, age 72, unknown 84.0
2769 Male, age 72, unknown 82.3
2588 Male, age 74, left hemisphere 75.4
Substantia nigra
nTPM: 93.6
1889 Female, age 72, unknown 102.5
1941 Male, age 53, unknown 98.7
2241 Male, age 72, unknown 98.7
1916 Female, age 42, unknown 97.5
1851 Male, age 51, unknown 96.9
2409 Female, age 72, unknown 93.0
2699 Male, age 18, unknown 92.6
2590 Female, age 75, unknown 86.8
2665 Male, age 74, both hemispheres 85.5
2583 Male, age 75, right hemisphere 83.4
Superior colliculus
nTPM: 86.6
2087 Female, age 72, unknown 96.6
1913 Female, age 42, unknown 90.8
2587 Male, age 74, left hemisphere 90.5
2668 Female, age 75, unknown 89.9
2261 Male, age 18, unknown 87.4
1796 Male, age 53, unknown 85.1
1995 Male, age 72, unknown 84.9
1839 Male, age 51, unknown 82.8
1895 Male, age 76, right hemisphere 82.6
2664 Male, age 75, both hemispheres 75.4
Ventral tegmental area
nTPM: 87.7
2218 Male, age 76, both hemispheres 97.8
2223 Female, age 72, unknown 91.2
2410 Female, age 72, unknown 87.8
1915 Female, age 42, unknown 86.3
1942 Male, age 51, unknown 82.1
2021 Male, age 53, unknown 81.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 106.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.5
Samples: 139

Max nTPM: 201.9
Min nTPM: 76.2
Std nTPM: 22.2
Median nTPM: 100.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 201.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 199.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 186.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 155.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 153.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 150.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 148.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 147.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 147.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 143.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 142.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 288.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 288.7
FF:10158-103A5 76 years, female 288.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 8.8
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 7.7
Sample C Male 7.1
Sample D Male 8.8
Periaqueductal gray
nTPM: 8.8
Samples: 3

Max nTPM: 10.5
Min nTPM: 5.6
Sample B Female 10.4
Sample C Male 5.6
Sample D Male 10.5
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 16.4
Min nTPM: 1.5
Sample A Female 1.5
Sample B Female 6.2
Sample C Male 6.7
Sample D Male 16.4
Superior colliculi
nTPM: 4.4
Samples: 4

Max nTPM: 7.4
Min nTPM: 1.6
Sample A Female 1.6
Sample B Female 3.8
Sample C Male 7.4
Sample D Male 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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