MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:45.4 nTPM
HPA:45.4 nTPM
GTEx:15.5 nTPM
FANTOM5:193.5 Scaled Tags Per Million
Pig:46.0 nTPM
Mouse:25.0 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.2
1830 Male, age 51, unknown 53.8
1833 Male, age 53, unknown 45.4
1870 Female, age 42, unknown 43.7
2411 Female, age 72, unknown 36.2
2019 Male, age 18, unknown 35.1
2666 Male, age 74, left hemisphere 29.5
2828 Female, age 72, unknown 24.8
2219 Male, age 76, both hemispheres 21.2
2586 Male, age 75, left hemisphere 17.5
1827 Male, age 72, unknown 15.1
Dorsal raphe nucleus
nTPM: 15.8
2750 Male, age 76, both hemispheres 34.6
2016 Female, age 72, unknown 20.6
1828 Male, age 53, unknown 17.2
2047 Male, age 72, unknown 5.7
2298 Female, age 72, unknown 0.8
Inferior colliculus
nTPM: 17.3
1890 Male, age 53, unknown 23.3
2849 Male, age 72, unknown 19.8
1848 Female, age 42, unknown 16.1
2097 Female, age 72, unknown 9.9
Median raphe nucleus
nTPM: 13.8
2220 Male, age 76, midline 13.8
Pedunculopontine tegmental nucleus
nTPM: 23.8
2334 Male, age 80, both hemispheres 28.1
2338 Male, age 61, both hemispheres 25.7
1921 Female, age 85, both hemispheres 17.7
Periaquaductal grey, anterior
nTPM: 11.1
2502 Female, age 75, unknown 17.4
1947 Male, age 18, unknown 14.9
1795 Male, age 51, unknown 0.9
Periaquaductal grey, dorsal
nTPM: 11.9
2464 Female, age 72, unknown 19.1
2850 Male, age 76, both hemispheres 15.7
1831 Male, age 72, unknown 11.3
1840 Male, age 53, unknown 1.3
Periaquaductal grey, lateral
nTPM: 14.0
2053 Male, age 18, unknown 16.6
2140 Male, age 76, both hemispheres 15.2
2272 Male, age 74, both hemispheres 10.1
Pretectal area
nTPM: 13.5
2316 Male, age 76, right hemisphere 25.3
1815 Male, age 53, unknown 23.9
2407 Male, age 75, both hemispheres 23.8
2825 Male, age 18, unknown 15.2
1817 Female, age 42, unknown 13.2
2007 Male, age 72, unknown 12.3
2667 Female, age 75, unknown 10.3
1944 Female, age 72, unknown 8.1
2273 Male, age 74, both hemispheres 7.7
2224 Female, age 72, unknown 7.6
1816 Male, age 51, unknown 1.3
Red nucleus
nTPM: 45.4
1865 Male, age 51, unknown 65.6
1904 Male, age 53, unknown 54.5
2503 Female, age 72, unknown 51.2
1821 Female, age 72, unknown 50.8
2769 Male, age 72, unknown 49.2
2227 Male, age 72, unknown 46.6
2785 Male, age 18, unknown 46.4
1954 Female, age 42, unknown 44.8
2823 Male, age 76, right hemisphere 42.0
2588 Male, age 74, left hemisphere 38.9
2725 Female, age 75, unknown 31.1
2584 Male, age 75, left hemisphere 23.4
Substantia nigra
nTPM: 23.5
2409 Female, age 72, unknown 40.5
2699 Male, age 18, unknown 33.9
2590 Female, age 75, unknown 27.4
2583 Male, age 75, right hemisphere 26.5
1851 Male, age 51, unknown 25.4
2241 Male, age 72, unknown 22.5
1889 Female, age 72, unknown 20.8
2665 Male, age 74, both hemispheres 16.1
1941 Male, age 53, unknown 13.2
1916 Female, age 42, unknown 8.4
Superior colliculus
nTPM: 25.6
1913 Female, age 42, unknown 56.8
1995 Male, age 72, unknown 48.6
1895 Male, age 76, right hemisphere 33.8
2587 Male, age 74, left hemisphere 28.5
1839 Male, age 51, unknown 27.4
2668 Female, age 75, unknown 23.9
1796 Male, age 53, unknown 12.3
2087 Female, age 72, unknown 11.9
2664 Male, age 75, both hemispheres 10.5
2261 Male, age 18, unknown 2.2
Ventral tegmental area
nTPM: 23.5
2223 Female, age 72, unknown 34.1
2410 Female, age 72, unknown 32.1
2218 Male, age 76, both hemispheres 20.6
2021 Male, age 53, unknown 20.5
1942 Male, age 51, unknown 18.0
1915 Female, age 42, unknown 15.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.5
Samples: 139

Max nTPM: 43.6
Min nTPM: 5.3
Std nTPM: 6.5
Median nTPM: 14.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 43.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 39.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 34.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 33.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 31.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 31.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 29.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 28.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 28.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 27.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 27.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 193.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 193.5
FF:10158-103A5 76 years, female 193.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.0
Pig sample Sample description nTPM
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 83.1
Min nTPM: 27.4
Sample A Female 83.1
Sample B Female 44.7
Sample C Male 28.9
Sample D Male 27.4
Periaqueductal gray
nTPM: 33.0
Samples: 3

Max nTPM: 37.5
Min nTPM: 25.8
Sample B Female 37.5
Sample C Male 25.8
Sample D Male 35.7
Substantia nigra
nTPM: 44.0
Samples: 4

Max nTPM: 70.6
Min nTPM: 31.3
Sample A Female 36.3
Sample B Female 31.3
Sample C Male 37.7
Sample D Male 70.6
Superior colliculi
nTPM: 34.4
Samples: 4

Max nTPM: 42.8
Min nTPM: 23.0
Sample A Female 34.4
Sample B Female 23.0
Sample C Male 37.5
Sample D Male 42.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 26.2
Min nTPM: 23.4
Sample A Male 23.4
Sample B Male 25.7
Sample C Female 26.2
Sample D Female 24.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
71735832 Antisense, RP_051010_03_C06, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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