MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:35.7 nTPM
HPA:35.7 nTPM
GTEx:44.7 nTPM
FANTOM5:85.2 Scaled Tags Per Million
Pig:19.9 nTPM
Mouse:62.3 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.7
2586 Male, age 75, left hemisphere 43.3
1833 Male, age 53, unknown 36.1
1830 Male, age 51, unknown 34.6
1870 Female, age 42, unknown 34.4
2411 Female, age 72, unknown 33.5
2666 Male, age 74, left hemisphere 33.3
2019 Male, age 18, unknown 31.1
1827 Male, age 72, unknown 30.2
2828 Female, age 72, unknown 27.5
2219 Male, age 76, both hemispheres 23.5
Dorsal raphe nucleus
nTPM: 26.3
2750 Male, age 76, both hemispheres 28.7
2016 Female, age 72, unknown 27.6
2047 Male, age 72, unknown 26.7
1828 Male, age 53, unknown 26.6
2298 Female, age 72, unknown 22.1
Inferior colliculus
nTPM: 31.1
1890 Male, age 53, unknown 32.4
2849 Male, age 72, unknown 32.0
1848 Female, age 42, unknown 31.6
2097 Female, age 72, unknown 28.5
Median raphe nucleus
nTPM: 23.5
2220 Male, age 76, midline 23.5
Pedunculopontine tegmental nucleus
nTPM: 27.3
2338 Male, age 61, both hemispheres 27.7
1921 Female, age 85, both hemispheres 27.3
2334 Male, age 80, both hemispheres 26.9
Periaquaductal grey, anterior
nTPM: 27.1
2502 Female, age 75, unknown 29.3
1947 Male, age 18, unknown 26.8
1795 Male, age 51, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 27.3
2464 Female, age 72, unknown 30.1
1840 Male, age 53, unknown 29.0
1831 Male, age 72, unknown 26.5
2850 Male, age 76, both hemispheres 23.7
Periaquaductal grey, lateral
nTPM: 26.5
2053 Male, age 18, unknown 30.6
2272 Male, age 74, both hemispheres 24.7
2140 Male, age 76, both hemispheres 24.2
Pretectal area
nTPM: 27.4
2407 Male, age 75, both hemispheres 34.9
1815 Male, age 53, unknown 30.6
2825 Male, age 18, unknown 29.2
1816 Male, age 51, unknown 28.1
1817 Female, age 42, unknown 26.6
2007 Male, age 72, unknown 26.6
2316 Male, age 76, right hemisphere 26.2
2667 Female, age 75, unknown 25.9
1944 Female, age 72, unknown 25.8
2224 Female, age 72, unknown 24.9
2273 Male, age 74, both hemispheres 22.7
Red nucleus
nTPM: 34.1
2584 Male, age 75, left hemisphere 40.2
1904 Male, age 53, unknown 37.4
2588 Male, age 74, left hemisphere 37.0
1865 Male, age 51, unknown 36.5
1821 Female, age 72, unknown 36.3
2503 Female, age 72, unknown 36.3
2227 Male, age 72, unknown 34.0
2769 Male, age 72, unknown 32.7
1954 Female, age 42, unknown 32.2
2725 Female, age 75, unknown 30.5
2785 Male, age 18, unknown 29.2
2823 Male, age 76, right hemisphere 27.4
Substantia nigra
nTPM: 35.7
2409 Female, age 72, unknown 45.3
2665 Male, age 74, both hemispheres 42.6
2699 Male, age 18, unknown 40.2
2583 Male, age 75, right hemisphere 38.6
1851 Male, age 51, unknown 37.1
2590 Female, age 75, unknown 36.3
2241 Male, age 72, unknown 32.0
1916 Female, age 42, unknown 31.2
1889 Female, age 72, unknown 30.7
1941 Male, age 53, unknown 23.1
Superior colliculus
nTPM: 31.4
1995 Male, age 72, unknown 37.8
1913 Female, age 42, unknown 35.9
2587 Male, age 74, left hemisphere 35.0
2668 Female, age 75, unknown 32.4
2664 Male, age 75, both hemispheres 32.2
1796 Male, age 53, unknown 30.5
1839 Male, age 51, unknown 28.9
2087 Female, age 72, unknown 27.7
1895 Male, age 76, right hemisphere 27.3
2261 Male, age 18, unknown 26.4
Ventral tegmental area
nTPM: 31.0
2223 Female, age 72, unknown 36.4
1915 Female, age 42, unknown 33.5
2410 Female, age 72, unknown 32.1
2021 Male, age 53, unknown 30.8
1942 Male, age 51, unknown 28.5
2218 Male, age 76, both hemispheres 24.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.7
Samples: 139

Max nTPM: 108.9
Min nTPM: 16.0
Std nTPM: 18.5
Median nTPM: 40.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 108.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 100.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 98.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 95.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 88.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 85.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 79.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 76.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 74.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 73.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 73.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.2
FF:10158-103A5 76 years, female 85.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.9
Pig sample Sample description nTPM
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 24.2
Min nTPM: 17.5
Sample A Female 24.2
Sample B Female 19.4
Sample C Male 18.4
Sample D Male 17.5
Periaqueductal gray
nTPM: 16.3
Samples: 3

Max nTPM: 16.6
Min nTPM: 15.9
Sample B Female 16.5
Sample C Male 15.9
Sample D Male 16.6
Substantia nigra
nTPM: 18.8
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.8
Sample A Female 19.0
Sample B Female 16.8
Sample C Male 19.0
Sample D Male 20.4
Superior colliculi
nTPM: 16.6
Samples: 4

Max nTPM: 17.6
Min nTPM: 15.1
Sample A Female 17.1
Sample B Female 15.1
Sample C Male 16.5
Sample D Male 17.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.4
Samples: 4

Max nTPM: 67.3
Min nTPM: 57.7
Sample A Male 57.7
Sample B Male 58.0
Sample C Female 67.3
Sample D Female 66.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
73584837 Antisense, RP_051206_01_C05, Mouse strain C57BL/6J (56 days, male) 3.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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