MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA:33.2 nTPM
GTEx:57.9 nTPM
FANTOM5:430.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
2411 Female, age 72, unknown 45.4
1833 Male, age 53, unknown 36.6
2586 Male, age 75, left hemisphere 32.8
1830 Male, age 51, unknown 32.5
1870 Female, age 42, unknown 26.6
2828 Female, age 72, unknown 24.5
2019 Male, age 18, unknown 24.2
1827 Male, age 72, unknown 21.0
2219 Male, age 76, both hemispheres 13.3
2666 Male, age 74, left hemisphere 10.4
Dorsal raphe nucleus
nTPM: 14.8
2750 Male, age 76, both hemispheres 27.3
2016 Female, age 72, unknown 14.9
1828 Male, age 53, unknown 12.8
2298 Female, age 72, unknown 10.9
2047 Male, age 72, unknown 8.2
Inferior colliculus
nTPM: 12.6
1848 Female, age 42, unknown 20.1
2849 Male, age 72, unknown 17.9
1890 Male, age 53, unknown 8.8
2097 Female, age 72, unknown 3.8
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Pedunculopontine tegmental nucleus
nTPM: 13.7
1921 Female, age 85, both hemispheres 21.7
2334 Male, age 80, both hemispheres 19.3
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 21.8
2502 Female, age 75, unknown 36.0
1947 Male, age 18, unknown 16.8
1795 Male, age 51, unknown 12.5
Periaquaductal grey, dorsal
nTPM: 9.7
2464 Female, age 72, unknown 19.3
1840 Male, age 53, unknown 9.7
1831 Male, age 72, unknown 9.0
2850 Male, age 76, both hemispheres 0.6
Periaquaductal grey, lateral
nTPM: 12.3
2053 Male, age 18, unknown 16.3
2272 Male, age 74, both hemispheres 15.8
2140 Male, age 76, both hemispheres 4.7
Pretectal area
nTPM: 18.5
2407 Male, age 75, both hemispheres 36.4
1817 Female, age 42, unknown 24.3
1815 Male, age 53, unknown 23.1
2825 Male, age 18, unknown 21.3
2667 Female, age 75, unknown 18.7
2007 Male, age 72, unknown 18.4
2316 Male, age 76, right hemisphere 16.9
2224 Female, age 72, unknown 14.4
2273 Male, age 74, both hemispheres 14.1
1816 Male, age 51, unknown 12.0
1944 Female, age 72, unknown 3.7
Red nucleus
nTPM: 33.2
2503 Female, age 72, unknown 46.5
1821 Female, age 72, unknown 45.0
2588 Male, age 74, left hemisphere 43.0
1904 Male, age 53, unknown 40.3
1865 Male, age 51, unknown 40.1
2785 Male, age 18, unknown 39.2
2769 Male, age 72, unknown 38.5
2227 Male, age 72, unknown 35.7
1954 Female, age 42, unknown 27.2
2823 Male, age 76, right hemisphere 20.0
2584 Male, age 75, left hemisphere 16.5
2725 Female, age 75, unknown 6.9
Substantia nigra
nTPM: 20.4
2583 Male, age 75, right hemisphere 33.0
2590 Female, age 75, unknown 29.2
1851 Male, age 51, unknown 27.6
1889 Female, age 72, unknown 22.6
2699 Male, age 18, unknown 20.7
2409 Female, age 72, unknown 19.8
1916 Female, age 42, unknown 18.5
1941 Male, age 53, unknown 17.9
2241 Male, age 72, unknown 14.3
2665 Male, age 74, both hemispheres 0.0
Superior colliculus
nTPM: 26.5
1913 Female, age 42, unknown 36.0
1895 Male, age 76, right hemisphere 31.6
2664 Male, age 75, both hemispheres 31.2
2587 Male, age 74, left hemisphere 30.6
1995 Male, age 72, unknown 29.8
2668 Female, age 75, unknown 28.9
1839 Male, age 51, unknown 27.9
1796 Male, age 53, unknown 23.3
2261 Male, age 18, unknown 17.0
2087 Female, age 72, unknown 8.4
Ventral tegmental area
nTPM: 24.4
2410 Female, age 72, unknown 48.6
2223 Female, age 72, unknown 29.2
1915 Female, age 42, unknown 19.2
2218 Male, age 76, both hemispheres 19.1
1942 Male, age 51, unknown 17.6
2021 Male, age 53, unknown 12.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.9
Samples: 139

Max nTPM: 156.2
Min nTPM: 23.8
Std nTPM: 20.9
Median nTPM: 52.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 156.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 122.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 120.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 116.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 109.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 106.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 102.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 94.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 91.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 90.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 89.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 430.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 430.4
FF:10158-103A5 76 years, female 430.4

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The Human Protein Atlas

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