MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.7 nTPM
HPA:31.7 nTPM
GTEx:28.7 nTPM
FANTOM5:65.9 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:9.1 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.8
2411 Female, age 72, unknown 32.2
1870 Female, age 42, unknown 32.1
2019 Male, age 18, unknown 29.8
1833 Male, age 53, unknown 29.3
1830 Male, age 51, unknown 28.9
2666 Male, age 74, left hemisphere 28.3
2828 Female, age 72, unknown 28.1
1827 Male, age 72, unknown 26.9
2219 Male, age 76, both hemispheres 26.8
2586 Male, age 75, left hemisphere 25.9
Dorsal raphe nucleus
nTPM: 28.8
2750 Male, age 76, both hemispheres 32.2
1828 Male, age 53, unknown 28.3
2047 Male, age 72, unknown 28.1
2298 Female, age 72, unknown 27.7
2016 Female, age 72, unknown 27.4
Inferior colliculus
nTPM: 26.1
2097 Female, age 72, unknown 28.3
1890 Male, age 53, unknown 27.6
1848 Female, age 42, unknown 24.8
2849 Male, age 72, unknown 23.8
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Pedunculopontine tegmental nucleus
nTPM: 30.7
2338 Male, age 61, both hemispheres 32.0
2334 Male, age 80, both hemispheres 30.7
1921 Female, age 85, both hemispheres 29.6
Periaquaductal grey, anterior
nTPM: 26.1
1947 Male, age 18, unknown 27.4
1795 Male, age 51, unknown 27.1
2502 Female, age 75, unknown 23.7
Periaquaductal grey, dorsal
nTPM: 25.2
1831 Male, age 72, unknown 26.7
2464 Female, age 72, unknown 26.0
2850 Male, age 76, both hemispheres 24.2
1840 Male, age 53, unknown 23.7
Periaquaductal grey, lateral
nTPM: 26.3
2272 Male, age 74, both hemispheres 28.7
2053 Male, age 18, unknown 26.3
2140 Male, age 76, both hemispheres 24.0
Pretectal area
nTPM: 27.7
1817 Female, age 42, unknown 29.3
1815 Male, age 53, unknown 29.2
2007 Male, age 72, unknown 28.9
1944 Female, age 72, unknown 28.2
2224 Female, age 72, unknown 27.8
2667 Female, age 75, unknown 27.8
1816 Male, age 51, unknown 27.7
2273 Male, age 74, both hemispheres 26.9
2407 Male, age 75, both hemispheres 26.6
2825 Male, age 18, unknown 26.6
2316 Male, age 76, right hemisphere 26.0
Red nucleus
nTPM: 31.7
1821 Female, age 72, unknown 33.5
1865 Male, age 51, unknown 33.2
2503 Female, age 72, unknown 33.1
2823 Male, age 76, right hemisphere 33.1
1904 Male, age 53, unknown 32.6
1954 Female, age 42, unknown 32.5
2769 Male, age 72, unknown 31.7
2725 Female, age 75, unknown 31.3
2227 Male, age 72, unknown 30.7
2785 Male, age 18, unknown 30.5
2588 Male, age 74, left hemisphere 30.3
2584 Male, age 75, left hemisphere 27.8
Substantia nigra
nTPM: 29.5
2590 Female, age 75, unknown 32.3
2409 Female, age 72, unknown 31.5
1851 Male, age 51, unknown 30.7
1889 Female, age 72, unknown 30.4
2583 Male, age 75, right hemisphere 29.5
2241 Male, age 72, unknown 28.8
1916 Female, age 42, unknown 28.7
2665 Male, age 74, both hemispheres 27.9
1941 Male, age 53, unknown 27.7
2699 Male, age 18, unknown 27.7
Superior colliculus
nTPM: 27.6
1913 Female, age 42, unknown 32.6
1995 Male, age 72, unknown 30.4
2587 Male, age 74, left hemisphere 29.1
2668 Female, age 75, unknown 28.2
2087 Female, age 72, unknown 27.8
2261 Male, age 18, unknown 27.4
1796 Male, age 53, unknown 27.3
1839 Male, age 51, unknown 25.5
1895 Male, age 76, right hemisphere 25.0
2664 Male, age 75, both hemispheres 22.4
Ventral tegmental area
nTPM: 29.8
2410 Female, age 72, unknown 32.8
2223 Female, age 72, unknown 30.5
1915 Female, age 42, unknown 29.7
2218 Male, age 76, both hemispheres 29.6
2021 Male, age 53, unknown 28.6
1942 Male, age 51, unknown 27.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.7
Samples: 139

Max nTPM: 62.5
Min nTPM: 14.7
Std nTPM: 9.3
Median nTPM: 26.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 62.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 53.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 52.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 51.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 49.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 48.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 46.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 45.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 45.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.9
FF:10158-103A5 76 years, female 65.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.7
Pig sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 19.1
Min nTPM: 9.4
Sample A Female 13.9
Sample B Female 19.1
Sample C Male 11.9
Sample D Male 9.4
Periaqueductal gray
nTPM: 12.4
Samples: 3

Max nTPM: 15.5
Min nTPM: 7.9
Sample B Female 13.9
Sample C Male 15.5
Sample D Male 7.9
Substantia nigra
nTPM: 18.7
Samples: 4

Max nTPM: 32.7
Min nTPM: 8.8
Sample A Female 32.7
Sample B Female 12.0
Sample C Male 21.2
Sample D Male 8.8
Superior colliculi
nTPM: 16.1
Samples: 4

Max nTPM: 29.2
Min nTPM: 7.7
Sample A Female 29.2
Sample B Female 9.7
Sample C Male 17.6
Sample D Male 7.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.9
Sample A Male 9.8
Sample B Male 10.0
Sample C Female 7.9
Sample D Female 8.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
512749 Antisense, RP_040809_02_B07, Mouse strain C57BL/6J (56 days, male) 4.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.