MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.0 nTPM
HPA:14.0 nTPM
GTEx:32.9 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:45.8 nTPM
Mouse:39.9 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.5
2019 Male, age 18, unknown 14.4
2411 Female, age 72, unknown 13.4
1827 Male, age 72, unknown 13.2
2828 Female, age 72, unknown 12.8
1870 Female, age 42, unknown 12.6
2586 Male, age 75, left hemisphere 12.2
2219 Male, age 76, both hemispheres 11.8
1830 Male, age 51, unknown 11.7
1833 Male, age 53, unknown 11.5
2666 Male, age 74, left hemisphere 10.8
Dorsal raphe nucleus
nTPM: 12.8
2298 Female, age 72, unknown 13.9
2750 Male, age 76, both hemispheres 13.3
1828 Male, age 53, unknown 12.5
2047 Male, age 72, unknown 12.3
2016 Female, age 72, unknown 12.0
Inferior colliculus
nTPM: 11.9
2097 Female, age 72, unknown 13.1
1890 Male, age 53, unknown 12.4
1848 Female, age 42, unknown 11.9
2849 Male, age 72, unknown 10.1
Median raphe nucleus
nTPM: 12.0
2220 Male, age 76, midline 12.0
Pedunculopontine tegmental nucleus
nTPM: 12.4
1921 Female, age 85, both hemispheres 13.0
2334 Male, age 80, both hemispheres 12.9
2338 Male, age 61, both hemispheres 11.2
Periaquaductal grey, anterior
nTPM: 12.3
1795 Male, age 51, unknown 12.5
2502 Female, age 75, unknown 12.4
1947 Male, age 18, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 11.2
1831 Male, age 72, unknown 11.6
2464 Female, age 72, unknown 11.6
1840 Male, age 53, unknown 11.4
2850 Male, age 76, both hemispheres 10.3
Periaquaductal grey, lateral
nTPM: 12.4
2272 Male, age 74, both hemispheres 14.2
2053 Male, age 18, unknown 12.3
2140 Male, age 76, both hemispheres 10.6
Pretectal area
nTPM: 14.0
1816 Male, age 51, unknown 16.1
1817 Female, age 42, unknown 15.6
1815 Male, age 53, unknown 15.4
2007 Male, age 72, unknown 15.3
1944 Female, age 72, unknown 14.8
2273 Male, age 74, both hemispheres 14.1
2667 Female, age 75, unknown 14.1
2224 Female, age 72, unknown 13.0
2316 Male, age 76, right hemisphere 12.0
2825 Male, age 18, unknown 11.8
2407 Male, age 75, both hemispheres 11.6
Red nucleus
nTPM: 12.9
1821 Female, age 72, unknown 14.0
2785 Male, age 18, unknown 13.8
2823 Male, age 76, right hemisphere 13.5
1904 Male, age 53, unknown 13.3
2725 Female, age 75, unknown 13.3
2503 Female, age 72, unknown 13.0
1865 Male, age 51, unknown 12.9
2227 Male, age 72, unknown 12.9
1954 Female, age 42, unknown 12.7
2769 Male, age 72, unknown 12.4
2588 Male, age 74, left hemisphere 11.7
2584 Male, age 75, left hemisphere 11.1
Substantia nigra
nTPM: 12.9
1889 Female, age 72, unknown 14.5
2409 Female, age 72, unknown 14.0
1916 Female, age 42, unknown 13.9
2241 Male, age 72, unknown 13.5
1851 Male, age 51, unknown 13.4
2583 Male, age 75, right hemisphere 12.5
2590 Female, age 75, unknown 12.4
1941 Male, age 53, unknown 11.8
2665 Male, age 74, both hemispheres 11.4
2699 Male, age 18, unknown 11.3
Superior colliculus
nTPM: 12.8
2087 Female, age 72, unknown 14.0
2261 Male, age 18, unknown 13.9
1796 Male, age 53, unknown 13.0
1895 Male, age 76, right hemisphere 13.0
2587 Male, age 74, left hemisphere 12.9
1913 Female, age 42, unknown 12.7
1995 Male, age 72, unknown 12.7
2668 Female, age 75, unknown 12.5
1839 Male, age 51, unknown 12.1
2664 Male, age 75, both hemispheres 11.7
Ventral tegmental area
nTPM: 12.5
2410 Female, age 72, unknown 14.6
1915 Female, age 42, unknown 12.4
2218 Male, age 76, both hemispheres 12.2
2223 Female, age 72, unknown 12.2
2021 Male, age 53, unknown 12.0
1942 Male, age 51, unknown 11.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.9
Samples: 139

Max nTPM: 49.1
Min nTPM: 16.9
Std nTPM: 6.5
Median nTPM: 32.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 49.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 45.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 45.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 45.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 44.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 44.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 44.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 43.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 43.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 42.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.8
FF:10158-103A5 76 years, female 57.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.8
Pig sample Sample description nTPM
Midbrain
nTPM: 43.9
Samples: 4

Max nTPM: 54.7
Min nTPM: 38.9
Sample A Female 38.9
Sample B Female 40.9
Sample C Male 54.7
Sample D Male 41.0
Periaqueductal gray
nTPM: 33.6
Samples: 3

Max nTPM: 35.3
Min nTPM: 30.9
Sample B Female 35.3
Sample C Male 34.7
Sample D Male 30.9
Substantia nigra
nTPM: 38.2
Samples: 4

Max nTPM: 48.6
Min nTPM: 31.3
Sample A Female 48.6
Sample B Female 33.3
Sample C Male 39.4
Sample D Male 31.3
Superior colliculi
nTPM: 45.8
Samples: 4

Max nTPM: 59.5
Min nTPM: 36.4
Sample A Female 47.2
Sample B Female 36.4
Sample C Male 59.5
Sample D Male 40.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.9
Samples: 4

Max nTPM: 41.7
Min nTPM: 38.0
Sample A Male 41.6
Sample B Male 41.7
Sample C Female 38.0
Sample D Female 38.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
72080084 Antisense, RP_051017_03_C03, Mouse strain C57BL/6J (56 days, male) 3.2
68920743 Antisense, RP_050303_01_B05, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.