BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:14.1 nTPM
HPA:14.1 nTPM
GTEx:36.3 nTPM
FANTOM5:99.3 Scaled Tags Per Million
Pig:43.2 nTPM
Mouse:40.2 nTPM
Allen mouse:1.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038390
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.0
2481 Female, age 94, left hemisphere 16.5
1857 Female, age 85, left hemisphere 14.7
2288 Male, age 75, left hemisphere 14.7
1854 Male, age 80, left hemisphere 14.5
2846 Female, age 79, unknown 14.1
2290 Female, age 72, unknown 13.4
1781 Male, age 74, unknown 12.1
2289 Male, age 61, right hemisphere 11.9
Claustrum
nTPM: 11.6
2198 Male, age 80, both hemispheres 12.8
1956 Male, age 74, unknown 12.4
2392 Female, age 94, both hemispheres 12.4
2491 Male, age 75, both hemispheres 12.1
2568 Male, age 61, both hemispheres 11.7
2284 Female, age 91, both hemispheres 11.4
2292 Female, age 85, both hemispheres 11.0
2196 Female, age 79, unknown 10.7
2645 Female, age 72, unknown 9.8
Globus pallidus, externus
nTPM: 13.6
1996 Male, age 80, right hemisphere 15.8
2772 Female, age 79, unknown 14.9
2395 Male, age 75, both hemispheres 14.7
2646 Male, age 61, right hemisphere 11.4
2567 Female, age 72, unknown 11.0
Globus pallidus, internus
nTPM: 14.1
2483 Female, age 94, right hemisphere 16.6
2287 Male, age 75, right hemisphere 15.5
2778 Female, age 91, both hemispheres 14.5
2037 Male, age 80, right hemisphere 14.2
1818 Male, age 74, unknown 14.1
2111 Female, age 85, right hemisphere 12.6
2566 Female, age 72, unknown 11.3
Nucleus accumbens
nTPM: 13.4
2286 Male, age 75, left hemisphere 15.9
2391 Female, age 94, left hemisphere 14.2
1856 Female, age 91, right hemisphere 14.1
1806 Female, age 85, left hemisphere 13.8
1783 Male, age 74, unknown 12.8
2698 Female, age 72, unknown 12.3
2824 Male, age 61, right hemisphere 12.2
2732 Male, age 80, right hemisphere 11.4
Nucleus basalis of Meynert
nTPM: 12.8
2393 Male, age 80, right hemisphere 14.5
2484 Female, age 94, left hemisphere 13.3
2821 Male, age 75, both hemispheres 11.9
2569 Male, age 61, both hemispheres 11.5
Nucleus of the diagonal band
nTPM: 13.4
2775 Male, age 80, right hemisphere 14.6
1812 Female, age 91, both hemispheres 14.5
2029 Male, age 61, right hemisphere 14.0
2195 Female, age 85, both hemispheres 13.3
1979 Male, age 74, unknown 10.8
Olfactory tubercle
nTPM: 13.0
1846 Male, age 80, right hemisphere 14.3
1998 Female, age 91, both hemispheres 13.4
2856 Male, age 75, right hemisphere 12.6
2487 Female, age 94, left hemisphere 11.6
Putamen
nTPM: 13.9
2482 Female, age 94, left hemisphere 15.7
2466 Female, age 79, unknown 15.4
1829 Male, age 74, unknown 14.6
1838 Male, age 80, right hemisphere 14.3
1937 Female, age 91, right hemisphere 13.7
2647 Male, age 75, left hemisphere 11.8
2489 Female, age 72, unknown 11.7
Septal nuclei
nTPM: 12.2
2031 Female, age 72, unknown 13.5
1960 Male, age 74, unknown 13.4
2009 Female, age 91, both hemispheres 12.2
2394 Male, age 61, left hemisphere 12.2
2059 Female, age 85, both hemispheres 11.9
2199 Male, age 80, right hemisphere 11.1
2629 Female, age 94, right hemisphere 11.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.0
Samples: 246

Max nTPM: 73.6
Min nTPM: 16.3
Std nTPM: 7.3
Median nTPM: 34.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 73.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 61.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 55.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 55.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 52.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 52.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 51.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 51.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 49.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 48.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 47.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.2
Samples: 246

Max nTPM: 48.2
Min nTPM: 11.5
Std nTPM: 5.8
Median nTPM: 29.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 48.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 46.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 44.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 42.8
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 42.8
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 41.7
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 41.5
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 41.5
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 41.0
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 40.3
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 39.5
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Brain - Putamen (basal ganglia)
Average nTPM: 36.3
Samples: 205

Max nTPM: 62.3
Min nTPM: 16.5
Std nTPM: 6.3
Median nTPM: 36.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 62.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 60.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 57.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 54.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 50.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 48.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 48.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 47.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 46.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 46.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 46.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.1
FF:10164-103B2 76 years, female 49.1
Globus pallidus
Scaled Tags Per Million: 81.3
FF:10175-103C4 60 years, female 116.8
FF:10161-103A8 76 years, female 45.8
Nucleus accumbens
Scaled Tags Per Million: 99.3
FF:10037-101F1 23-56 years, mixed 99.3
Putamen
Scaled Tags Per Million: 64.3
FF:10176-103C5 60 years, female 64.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 43.2
Pig sample Sample description nTPM
Caudate
nTPM: 34.7
Samples: 4

Max nTPM: 38.1
Min nTPM: 33.3
Sample A Female 33.3
Sample B Female 33.3
Sample C Male 38.1
Sample D Male 34.1
Putamen
nTPM: 43.2
Samples: 4

Max nTPM: 59.9
Min nTPM: 36.5
Sample A Female 38.4
Sample B Female 36.5
Sample C Male 59.9
Sample D Male 37.9
Septum
nTPM: 36.3
Samples: 4

Max nTPM: 38.1
Min nTPM: 33.3
Sample A Female 36.6
Sample B Female 37.1
Sample C Male 38.1
Sample D Male 33.3
Ventral pallidum
nTPM: 38.3
Samples: 4

Max nTPM: 41.6
Min nTPM: 34.5
Sample A Female 36.5
Sample B Female 41.6
Sample C Male 40.6
Sample D Male 34.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.8
Samples: 4

Max nTPM: 39.4
Min nTPM: 32.1
Sample A Male 37.2
Sample B Male 34.6
Sample C Female 39.4
Sample D Female 32.1
Septum
nTPM: 34.4
Samples: 4

Max nTPM: 37.2
Min nTPM: 31.5
Sample A Male 31.5
Sample B Male 37.1
Sample C Female 37.2
Sample D Female 31.8
Ventral forebrain
nTPM: 40.2
Samples: 4

Max nTPM: 43.9
Min nTPM: 36.3
Sample A Male 43.9
Sample B Male 36.3
Sample C Female 41.1
Sample D Female 39.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
72080084 Antisense, RP_051017_03_C03, Mouse strain C57BL/6J (56 days, male) 2.2
68920743 Antisense, RP_050303_01_B05, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 1.7
72080084 Antisense, RP_051017_03_C03, Mouse strain C57BL/6J (56 days, male) 2.9
68920743 Antisense, RP_050303_01_B05, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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