MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA:28.0 nTPM
GTEx:33.2 nTPM
FANTOM5:123.2 Scaled Tags Per Million
Pig:139.4 nTPM
Mouse:78.1 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.5
2411 Female, age 72, unknown 30.7
1870 Female, age 42, unknown 30.1
1833 Male, age 53, unknown 26.8
1830 Male, age 51, unknown 26.5
1827 Male, age 72, unknown 24.0
2219 Male, age 76, both hemispheres 21.2
2666 Male, age 74, left hemisphere 19.6
2586 Male, age 75, left hemisphere 19.4
2828 Female, age 72, unknown 19.4
2019 Male, age 18, unknown 17.2
Dorsal raphe nucleus
nTPM: 26.1
1828 Male, age 53, unknown 28.0
2047 Male, age 72, unknown 27.3
2750 Male, age 76, both hemispheres 27.0
2298 Female, age 72, unknown 25.8
2016 Female, age 72, unknown 22.7
Inferior colliculus
nTPM: 22.4
1848 Female, age 42, unknown 26.9
2097 Female, age 72, unknown 22.4
2849 Male, age 72, unknown 22.0
1890 Male, age 53, unknown 18.3
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Pedunculopontine tegmental nucleus
nTPM: 27.7
1921 Female, age 85, both hemispheres 33.5
2334 Male, age 80, both hemispheres 30.9
2338 Male, age 61, both hemispheres 18.8
Periaquaductal grey, anterior
nTPM: 27.4
1947 Male, age 18, unknown 32.7
2502 Female, age 75, unknown 31.4
1795 Male, age 51, unknown 18.1
Periaquaductal grey, dorsal
nTPM: 21.7
2850 Male, age 76, both hemispheres 24.1
2464 Female, age 72, unknown 22.4
1840 Male, age 53, unknown 21.5
1831 Male, age 72, unknown 18.6
Periaquaductal grey, lateral
nTPM: 21.8
2053 Male, age 18, unknown 27.0
2272 Male, age 74, both hemispheres 19.3
2140 Male, age 76, both hemispheres 19.0
Pretectal area
nTPM: 22.8
2224 Female, age 72, unknown 25.6
2667 Female, age 75, unknown 25.4
2825 Male, age 18, unknown 24.9
1815 Male, age 53, unknown 24.0
2273 Male, age 74, both hemispheres 23.8
1944 Female, age 72, unknown 23.7
1817 Female, age 42, unknown 23.3
2007 Male, age 72, unknown 22.2
1816 Male, age 51, unknown 20.7
2316 Male, age 76, right hemisphere 20.0
2407 Male, age 75, both hemispheres 17.2
Red nucleus
nTPM: 22.8
1821 Female, age 72, unknown 35.2
1865 Male, age 51, unknown 31.0
1954 Female, age 42, unknown 26.5
2769 Male, age 72, unknown 23.3
2227 Male, age 72, unknown 23.2
1904 Male, age 53, unknown 23.0
2725 Female, age 75, unknown 22.1
2503 Female, age 72, unknown 20.8
2823 Male, age 76, right hemisphere 17.7
2588 Male, age 74, left hemisphere 17.4
2785 Male, age 18, unknown 16.9
2584 Male, age 75, left hemisphere 16.7
Substantia nigra
nTPM: 23.3
1916 Female, age 42, unknown 29.1
2241 Male, age 72, unknown 29.0
1941 Male, age 53, unknown 28.6
1889 Female, age 72, unknown 27.1
1851 Male, age 51, unknown 21.9
2409 Female, age 72, unknown 21.7
2699 Male, age 18, unknown 21.2
2665 Male, age 74, both hemispheres 18.4
2583 Male, age 75, right hemisphere 17.8
2590 Female, age 75, unknown 17.8
Superior colliculus
nTPM: 22.2
1839 Male, age 51, unknown 26.2
2587 Male, age 74, left hemisphere 25.8
1895 Male, age 76, right hemisphere 25.3
2261 Male, age 18, unknown 24.5
2668 Female, age 75, unknown 21.3
1913 Female, age 42, unknown 21.2
2664 Male, age 75, both hemispheres 20.5
2087 Female, age 72, unknown 20.0
1796 Male, age 53, unknown 19.8
1995 Male, age 72, unknown 17.4
Ventral tegmental area
nTPM: 24.2
2223 Female, age 72, unknown 31.4
2410 Female, age 72, unknown 28.5
2218 Male, age 76, both hemispheres 23.6
1915 Female, age 42, unknown 21.9
1942 Male, age 51, unknown 20.9
2021 Male, age 53, unknown 18.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.2
Samples: 139

Max nTPM: 78.0
Min nTPM: 12.0
Std nTPM: 11.9
Median nTPM: 31.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 78.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 69.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 67.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 64.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 62.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 53.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 53.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 52.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 51.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 50.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 123.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.2
FF:10158-103A5 76 years, female 123.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 139.4
Pig sample Sample description nTPM
Midbrain
nTPM: 139.5
Samples: 4

Max nTPM: 217.0
Min nTPM: 93.3
Sample A Female 217.0
Sample B Female 141.8
Sample C Male 105.7
Sample D Male 93.3
Periaqueductal gray
nTPM: 124.1
Samples: 3

Max nTPM: 132.4
Min nTPM: 113.9
Sample B Female 125.9
Sample C Male 132.4
Sample D Male 113.9
Substantia nigra
nTPM: 119.7
Samples: 4

Max nTPM: 156.5
Min nTPM: 81.7
Sample A Female 156.5
Sample B Female 81.7
Sample C Male 127.6
Sample D Male 113.1
Superior colliculi
nTPM: 98.6
Samples: 4

Max nTPM: 118.5
Min nTPM: 63.0
Sample A Female 102.8
Sample B Female 63.0
Sample C Male 110.1
Sample D Male 118.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 78.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.1
Samples: 4

Max nTPM: 80.6
Min nTPM: 75.6
Sample A Male 75.6
Sample B Male 77.4
Sample C Female 78.6
Sample D Female 80.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
227160 Antisense, RP_040604_01_H06, Mouse strain C57BL/6J (56 days, male) 8.0
71724560 Antisense, RP_050927_04_H09, Mouse strain C57BL/6J (56 days, male) 2.4
77414164 Antisense, RP_070205_01_F07, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.