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B3GAT1
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  • B3GAT1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:115.0 nTPM
HPA:115.0 nTPM
GTEx:199.6 nTPM
FANTOM5:204.5 Scaled Tags Per Million
Pig:67.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 115.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 95.8
2816 Male, age 47, midline 114.9
2565 Male, age 75, midline 99.3
2194 Female, age 79, both hemispheres 97.8
1981 Female, age 72, midline 87.2
2048 Male, age 55, midline 79.9
Cervical spinal cord, dorsal horn
nTPM: 110.7
2296 Male, age 66, both hemispheres 176.7
2173 Female, age 72, unknown 107.4
1877 Male, age 55, unknown 107.0
2069 Male, age 47, both hemispheres 98.2
2297 Male, age 75, both hemispheres 88.6
2721 Male, age 90, both hemispheres 86.2
Cervical spinal cord, ventral horn
nTPM: 115.0
2480 Male, age 75, both hemispheres 147.1
2820 Female, age 79, both hemispheres 118.0
2068 Male, age 55, unknown 114.5
2295 Male, age 66, both hemispheres 111.5
2809 Male, age 90, both hemispheres 104.4
2098 Female, age 72, unknown 94.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 199.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 199.6
Samples: 159

Max nTPM: 401.4
Min nTPM: 74.3
Std nTPM: 69.3
Median nTPM: 189.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 401.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 399.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 377.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 366.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 358.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 350.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 347.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 342.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 333.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 332.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 317.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 304.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 302.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 298.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 291.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 291.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 288.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 286.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 286.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 283.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 282.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 276.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 276.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 276.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 275.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 270.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 265.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 262.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 261.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 261.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 261.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 256.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 252.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 252.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 249.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 247.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 246.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 245.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 243.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 240.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 238.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 238.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 236.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 231.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 230.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 229.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 229.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 228.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 226.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 225.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 222.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 221.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 221.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 220.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 220.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 219.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 218.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 217.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 215.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 215.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 214.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 212.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 210.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 210.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 210.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 209.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 209.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 208.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 204.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 203.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 202.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 197.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 195.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 195.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 195.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 194.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 191.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 190.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 190.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 189.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 189.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 188.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 186.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 186.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 184.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 184.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 183.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 180.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 180.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 180.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 180.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 179.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 179.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 178.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 178.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 176.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 176.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 176.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 174.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 172.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 171.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 169.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 168.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 168.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 167.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 165.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 164.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 164.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 163.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 161.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 161.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 161.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 160.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 159.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 159.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 159.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 158.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 155.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 151.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 151.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 150.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 146.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 145.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 144.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 142.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 140.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 138.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 136.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 135.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 133.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 128.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 126.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 126.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 125.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 124.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 122.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 122.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 121.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 120.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 120.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 117.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 116.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 116.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 114.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 113.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 109.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 107.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 106.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 104.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 101.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 100.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 98.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 96.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 92.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 88.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 87.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 76.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 74.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 204.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 204.5
FF:10181-103D1 60 years, female 242.7
FF:10159-103A6 76 years, female 166.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 59.1
Samples: 4

Max nTPM: 74.8
Min nTPM: 43.1
Sample A Female 74.8
Sample B Female 52.6
Sample C Male 43.1
Sample D Male 65.8
Ventral spinal cord
nTPM: 67.1
Samples: 4

Max nTPM: 80.8
Min nTPM: 56.6
Sample A Female 80.8
Sample B Female 58.7
Sample C Male 56.6
Sample D Male 72.3

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