MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.4 nTPM
HPA:23.4 nTPM
GTEx:15.8 nTPM
FANTOM5:104.1 Scaled Tags Per Million
Pig:33.0 nTPM
Mouse:44.3 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.2
1833 Male, age 53, unknown 24.4
1830 Male, age 51, unknown 23.5
2019 Male, age 18, unknown 23.3
2411 Female, age 72, unknown 23.1
2219 Male, age 76, both hemispheres 22.9
1870 Female, age 42, unknown 21.2
2828 Female, age 72, unknown 19.9
1827 Male, age 72, unknown 19.1
2666 Male, age 74, left hemisphere 18.2
2586 Male, age 75, left hemisphere 16.6
Dorsal raphe nucleus
nTPM: 18.4
2016 Female, age 72, unknown 20.3
2750 Male, age 76, both hemispheres 19.9
1828 Male, age 53, unknown 19.5
2047 Male, age 72, unknown 16.7
2298 Female, age 72, unknown 15.4
Inferior colliculus
nTPM: 22.8
1890 Male, age 53, unknown 23.7
1848 Female, age 42, unknown 23.2
2097 Female, age 72, unknown 22.7
2849 Male, age 72, unknown 21.4
Median raphe nucleus
nTPM: 20.4
2220 Male, age 76, midline 20.4
Pedunculopontine tegmental nucleus
nTPM: 21.5
2338 Male, age 61, both hemispheres 22.8
1921 Female, age 85, both hemispheres 21.3
2334 Male, age 80, both hemispheres 20.5
Periaquaductal grey, anterior
nTPM: 16.5
2502 Female, age 75, unknown 17.5
1947 Male, age 18, unknown 16.4
1795 Male, age 51, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 20.4
2850 Male, age 76, both hemispheres 24.2
2464 Female, age 72, unknown 20.6
1831 Male, age 72, unknown 19.0
1840 Male, age 53, unknown 18.1
Periaquaductal grey, lateral
nTPM: 20.7
2140 Male, age 76, both hemispheres 23.3
2053 Male, age 18, unknown 19.4
2272 Male, age 74, both hemispheres 19.3
Pretectal area
nTPM: 21.1
2316 Male, age 76, right hemisphere 26.3
2667 Female, age 75, unknown 24.8
1944 Female, age 72, unknown 22.2
1815 Male, age 53, unknown 22.1
1817 Female, age 42, unknown 22.1
2007 Male, age 72, unknown 21.4
1816 Male, age 51, unknown 19.9
2224 Female, age 72, unknown 19.8
2273 Male, age 74, both hemispheres 19.1
2407 Male, age 75, both hemispheres 18.0
2825 Male, age 18, unknown 16.7
Red nucleus
nTPM: 23.4
1865 Male, age 51, unknown 25.9
1904 Male, age 53, unknown 25.7
1954 Female, age 42, unknown 25.4
2227 Male, age 72, unknown 24.6
2503 Female, age 72, unknown 24.5
2769 Male, age 72, unknown 23.9
1821 Female, age 72, unknown 23.7
2785 Male, age 18, unknown 23.1
2823 Male, age 76, right hemisphere 22.9
2588 Male, age 74, left hemisphere 22.8
2725 Female, age 75, unknown 19.7
2584 Male, age 75, left hemisphere 18.6
Substantia nigra
nTPM: 21.9
2699 Male, age 18, unknown 25.6
2241 Male, age 72, unknown 24.6
2665 Male, age 74, both hemispheres 22.4
1851 Male, age 51, unknown 21.8
2409 Female, age 72, unknown 21.7
1889 Female, age 72, unknown 21.3
1916 Female, age 42, unknown 21.2
2590 Female, age 75, unknown 21.1
2583 Male, age 75, right hemisphere 20.8
1941 Male, age 53, unknown 18.6
Superior colliculus
nTPM: 20.1
1895 Male, age 76, right hemisphere 22.5
1913 Female, age 42, unknown 22.1
1995 Male, age 72, unknown 21.9
2261 Male, age 18, unknown 20.8
2087 Female, age 72, unknown 20.5
2587 Male, age 74, left hemisphere 20.2
2668 Female, age 75, unknown 19.6
1839 Male, age 51, unknown 19.5
1796 Male, age 53, unknown 19.4
2664 Male, age 75, both hemispheres 14.1
Ventral tegmental area
nTPM: 21.1
2410 Female, age 72, unknown 24.9
2218 Male, age 76, both hemispheres 24.3
1915 Female, age 42, unknown 21.4
1942 Male, age 51, unknown 19.1
2021 Male, age 53, unknown 18.9
2223 Female, age 72, unknown 18.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.8
Samples: 139

Max nTPM: 25.0
Min nTPM: 11.2
Std nTPM: 2.3
Median nTPM: 15.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 22.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 22.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 21.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 20.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 20.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 20.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 19.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 19.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 19.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.1
FF:10158-103A5 76 years, female 104.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.0
Pig sample Sample description nTPM
Midbrain
nTPM: 33.0
Samples: 4

Max nTPM: 34.8
Min nTPM: 31.5
Sample A Female 34.8
Sample B Female 31.5
Sample C Male 31.9
Sample D Male 33.7
Periaqueductal gray
nTPM: 29.1
Samples: 3

Max nTPM: 30.7
Min nTPM: 28.0
Sample B Female 30.7
Sample C Male 28.7
Sample D Male 28.0
Substantia nigra
nTPM: 31.2
Samples: 4

Max nTPM: 35.1
Min nTPM: 28.9
Sample A Female 29.6
Sample B Female 31.2
Sample C Male 28.9
Sample D Male 35.1
Superior colliculi
nTPM: 33.0
Samples: 4

Max nTPM: 35.0
Min nTPM: 30.6
Sample A Female 30.6
Sample B Female 35.0
Sample C Male 32.9
Sample D Male 33.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 47.7
Min nTPM: 41.8
Sample A Male 41.8
Sample B Male 44.8
Sample C Female 47.7
Sample D Female 42.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
323168 Antisense, RP_040617_02_A01, Mouse strain C57BL/6J (56 days, male) 7.7
356861 Antisense, RP_040617_02_A01, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.