MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:80.7 nTPM
HPA:80.7 nTPM
GTEx:71.8 nTPM
FANTOM5:80.9 Scaled Tags Per Million
Pig:57.1 nTPM
Mouse:157.2 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.0
2411 Female, age 72, unknown 74.6
1833 Male, age 53, unknown 71.1
2219 Male, age 76, both hemispheres 69.3
1827 Male, age 72, unknown 69.0
1870 Female, age 42, unknown 68.5
1830 Male, age 51, unknown 67.2
2666 Male, age 74, left hemisphere 64.9
2828 Female, age 72, unknown 62.5
2019 Male, age 18, unknown 61.8
2586 Male, age 75, left hemisphere 61.1
Dorsal raphe nucleus
nTPM: 72.0
2298 Female, age 72, unknown 81.7
2047 Male, age 72, unknown 77.3
1828 Male, age 53, unknown 69.2
2750 Male, age 76, both hemispheres 66.8
2016 Female, age 72, unknown 65.1
Inferior colliculus
nTPM: 76.1
2097 Female, age 72, unknown 80.6
1848 Female, age 42, unknown 78.2
2849 Male, age 72, unknown 77.9
1890 Male, age 53, unknown 67.5
Median raphe nucleus
nTPM: 80.7
2220 Male, age 76, midline 80.7
Pedunculopontine tegmental nucleus
nTPM: 70.2
2334 Male, age 80, both hemispheres 75.4
1921 Female, age 85, both hemispheres 74.4
2338 Male, age 61, both hemispheres 60.9
Periaquaductal grey, anterior
nTPM: 72.8
1947 Male, age 18, unknown 80.9
1795 Male, age 51, unknown 71.2
2502 Female, age 75, unknown 66.3
Periaquaductal grey, dorsal
nTPM: 65.7
1840 Male, age 53, unknown 71.5
2464 Female, age 72, unknown 66.0
2850 Male, age 76, both hemispheres 64.6
1831 Male, age 72, unknown 60.7
Periaquaductal grey, lateral
nTPM: 70.6
2272 Male, age 74, both hemispheres 79.2
2053 Male, age 18, unknown 68.4
2140 Male, age 76, both hemispheres 64.1
Pretectal area
nTPM: 69.5
2224 Female, age 72, unknown 82.1
2273 Male, age 74, both hemispheres 75.7
2667 Female, age 75, unknown 74.0
2825 Male, age 18, unknown 73.7
2007 Male, age 72, unknown 68.5
1944 Female, age 72, unknown 68.1
2316 Male, age 76, right hemisphere 66.5
2407 Male, age 75, both hemispheres 66.5
1817 Female, age 42, unknown 66.3
1816 Male, age 51, unknown 63.4
1815 Male, age 53, unknown 59.4
Red nucleus
nTPM: 67.7
1821 Female, age 72, unknown 74.1
1954 Female, age 42, unknown 72.7
2227 Male, age 72, unknown 72.3
2769 Male, age 72, unknown 71.6
2503 Female, age 72, unknown 69.5
2725 Female, age 75, unknown 69.5
2823 Male, age 76, right hemisphere 65.5
1865 Male, age 51, unknown 65.1
1904 Male, age 53, unknown 64.4
2785 Male, age 18, unknown 63.9
2584 Male, age 75, left hemisphere 62.1
2588 Male, age 74, left hemisphere 61.1
Substantia nigra
nTPM: 69.3
1941 Male, age 53, unknown 83.3
1916 Female, age 42, unknown 80.3
1889 Female, age 72, unknown 70.6
1851 Male, age 51, unknown 69.7
2241 Male, age 72, unknown 67.6
2699 Male, age 18, unknown 67.3
2583 Male, age 75, right hemisphere 65.8
2590 Female, age 75, unknown 63.7
2665 Male, age 74, both hemispheres 62.8
2409 Female, age 72, unknown 61.7
Superior colliculus
nTPM: 65.8
1839 Male, age 51, unknown 75.0
1895 Male, age 76, right hemisphere 74.1
1796 Male, age 53, unknown 71.2
2668 Female, age 75, unknown 69.7
2587 Male, age 74, left hemisphere 68.7
2261 Male, age 18, unknown 66.1
2087 Female, age 72, unknown 65.1
1913 Female, age 42, unknown 57.3
1995 Male, age 72, unknown 56.6
2664 Male, age 75, both hemispheres 54.7
Ventral tegmental area
nTPM: 72.0
2410 Female, age 72, unknown 79.3
1915 Female, age 42, unknown 75.6
2218 Male, age 76, both hemispheres 71.4
1942 Male, age 51, unknown 70.4
2223 Female, age 72, unknown 68.3
2021 Male, age 53, unknown 67.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.8
Samples: 139

Max nTPM: 193.6
Min nTPM: 29.5
Std nTPM: 25.0
Median nTPM: 68.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 193.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 167.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 156.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 146.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 124.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 112.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 109.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 109.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 106.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 106.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 105.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.9
FF:10158-103A5 76 years, female 80.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.1
Pig sample Sample description nTPM
Midbrain
nTPM: 57.1
Samples: 4

Max nTPM: 64.8
Min nTPM: 43.8
Sample A Female 64.8
Sample B Female 43.8
Sample C Male 62.6
Sample D Male 57.3
Periaqueductal gray
nTPM: 43.7
Samples: 3

Max nTPM: 51.3
Min nTPM: 39.8
Sample B Female 40.1
Sample C Male 51.3
Sample D Male 39.8
Substantia nigra
nTPM: 50.3
Samples: 4

Max nTPM: 65.5
Min nTPM: 37.3
Sample A Female 65.5
Sample B Female 37.3
Sample C Male 55.6
Sample D Male 42.7
Superior colliculi
nTPM: 56.1
Samples: 4

Max nTPM: 65.1
Min nTPM: 39.0
Sample A Female 65.1
Sample B Female 39.0
Sample C Male 64.0
Sample D Male 56.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 157.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 157.2
Samples: 4

Max nTPM: 167.1
Min nTPM: 144.1
Sample A Male 167.1
Sample B Male 157.3
Sample C Female 144.1
Sample D Female 160.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
68191420 Antisense, RP_041129_01_B06, Mouse strain C57BL/6J (56 days, male) 8.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.