BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:39.5 nTPM
HPA:39.5 nTPM
GTEx:28.8 nTPM
FANTOM5:93.2 Scaled Tags Per Million
Pig:42.0 nTPM
Mouse:78.1 nTPM
Allen mouse:12.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA007991
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.9
2289 Male, age 61, right hemisphere 48.9
1854 Male, age 80, left hemisphere 42.9
2290 Female, age 72, unknown 40.9
1857 Female, age 85, left hemisphere 38.5
1781 Male, age 74, unknown 35.3
2846 Female, age 79, unknown 32.2
2288 Male, age 75, left hemisphere 30.2
2481 Female, age 94, left hemisphere 26.2
Claustrum
nTPM: 28.4
2568 Male, age 61, both hemispheres 38.2
2284 Female, age 91, both hemispheres 34.4
2491 Male, age 75, both hemispheres 32.6
2198 Male, age 80, both hemispheres 30.8
2645 Female, age 72, unknown 30.7
2392 Female, age 94, both hemispheres 27.4
2196 Female, age 79, unknown 23.1
1956 Male, age 74, unknown 21.2
2292 Female, age 85, both hemispheres 17.5
Globus pallidus, externus
nTPM: 17.7
2646 Male, age 61, right hemisphere 20.8
2567 Female, age 72, unknown 19.9
2772 Female, age 79, unknown 16.2
2395 Male, age 75, both hemispheres 15.9
1996 Male, age 80, right hemisphere 15.6
Globus pallidus, internus
nTPM: 17.0
1818 Male, age 74, unknown 20.4
2483 Female, age 94, right hemisphere 20.0
2287 Male, age 75, right hemisphere 18.2
2566 Female, age 72, unknown 17.2
2037 Male, age 80, right hemisphere 16.3
2111 Female, age 85, right hemisphere 14.9
2778 Female, age 91, both hemispheres 11.7
Nucleus accumbens
nTPM: 35.2
2824 Male, age 61, right hemisphere 49.2
1856 Female, age 91, right hemisphere 46.3
1783 Male, age 74, unknown 43.7
1806 Female, age 85, left hemisphere 40.4
2286 Male, age 75, left hemisphere 28.1
2732 Male, age 80, right hemisphere 27.1
2698 Female, age 72, unknown 26.1
2391 Female, age 94, left hemisphere 21.0
Nucleus basalis of Meynert
nTPM: 31.9
2484 Female, age 94, left hemisphere 46.3
2393 Male, age 80, right hemisphere 33.6
2821 Male, age 75, both hemispheres 24.9
2569 Male, age 61, both hemispheres 23.0
Nucleus of the diagonal band
nTPM: 24.7
1979 Male, age 74, unknown 34.0
2029 Male, age 61, right hemisphere 32.1
2775 Male, age 80, right hemisphere 21.4
1812 Female, age 91, both hemispheres 20.9
2195 Female, age 85, both hemispheres 15.1
Olfactory tubercle
nTPM: 28.3
2856 Male, age 75, right hemisphere 31.9
1998 Female, age 91, both hemispheres 30.4
2487 Female, age 94, left hemisphere 28.2
1846 Male, age 80, right hemisphere 22.6
Putamen
nTPM: 39.5
1838 Male, age 80, right hemisphere 45.8
2647 Male, age 75, left hemisphere 45.4
1937 Female, age 91, right hemisphere 40.2
2489 Female, age 72, unknown 40.1
2466 Female, age 79, unknown 38.0
1829 Male, age 74, unknown 36.6
2482 Female, age 94, left hemisphere 30.1
Septal nuclei
nTPM: 22.1
2394 Male, age 61, left hemisphere 29.1
2199 Male, age 80, right hemisphere 28.3
2009 Female, age 91, both hemispheres 22.6
2031 Female, age 72, unknown 21.4
2629 Female, age 94, right hemisphere 21.3
2059 Female, age 85, both hemispheres 19.1
1960 Male, age 74, unknown 12.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.0
Samples: 246

Max nTPM: 46.5
Min nTPM: 7.9
Std nTPM: 7.0
Median nTPM: 25.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 46.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 45.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 43.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 38.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 38.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 38.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 38.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 38.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 37.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 37.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 37.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.8
Samples: 246

Max nTPM: 53.4
Min nTPM: 6.3
Std nTPM: 8.2
Median nTPM: 29.6
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 53.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 46.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 45.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 45.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 43.8
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 42.3
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 42.0
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 41.9
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 41.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 41.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 41.6
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Brain - Putamen (basal ganglia)
Average nTPM: 24.3
Samples: 205

Max nTPM: 37.9
Min nTPM: 7.4
Std nTPM: 6.5
Median nTPM: 23.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 37.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 37.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 37.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 36.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 36.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 36.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 36.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 36.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 36.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 36.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 35.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 93.2
FF:10164-103B2 76 years, female 93.2
Globus pallidus
Scaled Tags Per Million: 19.8
FF:10161-103A8 76 years, female 20.7
FF:10175-103C4 60 years, female 18.9
Nucleus accumbens
Scaled Tags Per Million: 61.8
FF:10037-101F1 23-56 years, mixed 61.8
Putamen
Scaled Tags Per Million: 77.2
FF:10176-103C5 60 years, female 77.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.0
Pig sample Sample description nTPM
Caudate
nTPM: 42.1
Samples: 4

Max nTPM: 52.0
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 46.9
Sample C Male 52.0
Sample D Male 41.8
Putamen
nTPM: 38.3
Samples: 4

Max nTPM: 48.3
Min nTPM: 18.6
Sample A Female 18.6
Sample B Female 38.2
Sample C Male 48.3
Sample D Male 48.1
Septum
nTPM: 29.7
Samples: 4

Max nTPM: 31.3
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 31.3
Sample C Male 30.5
Sample D Male 28.8
Ventral pallidum
nTPM: 32.3
Samples: 4

Max nTPM: 35.8
Min nTPM: 28.3
Sample A Female 28.3
Sample B Female 31.4
Sample C Male 35.8
Sample D Male 33.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 78.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 78.1
Samples: 4

Max nTPM: 98.1
Min nTPM: 57.6
Sample A Male 91.3
Sample B Male 98.1
Sample C Female 57.6
Sample D Female 65.3
Septum
nTPM: 60.6
Samples: 4

Max nTPM: 66.2
Min nTPM: 54.5
Sample A Male 66.2
Sample B Male 59.1
Sample C Female 54.5
Sample D Female 62.7
Ventral forebrain
nTPM: 60.1
Samples: 4

Max nTPM: 64.4
Min nTPM: 56.8
Sample A Male 64.4
Sample B Male 61.4
Sample C Female 57.9
Sample D Female 56.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.8
74821649 Antisense, RP_060321_02_B08, Mouse strain C57BL/6J (56 days, male) 12.8
Pallidum
Expression energy: 9.1
74821649 Antisense, RP_060321_02_B08, Mouse strain C57BL/6J (56 days, male) 9.1

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