BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA:9.9 nTPM
GTEx:9.6 nTPM
FANTOM5:88.2 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:12.3 nTPM
Allen mouse:1.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.9
2289 Male, age 61, right hemisphere 11.5
2290 Female, age 72, unknown 10.9
1857 Female, age 85, left hemisphere 10.7
1854 Male, age 80, left hemisphere 10.4
2846 Female, age 79, unknown 10.2
1781 Male, age 74, unknown 9.7
2288 Male, age 75, left hemisphere 8.9
2481 Female, age 94, left hemisphere 6.6
Claustrum
nTPM: 8.2
2284 Female, age 91, both hemispheres 9.1
2568 Male, age 61, both hemispheres 9.0
2491 Male, age 75, both hemispheres 8.8
2198 Male, age 80, both hemispheres 8.4
2392 Female, age 94, both hemispheres 8.3
1956 Male, age 74, unknown 8.0
2645 Female, age 72, unknown 7.9
2196 Female, age 79, unknown 7.3
2292 Female, age 85, both hemispheres 7.3
Globus pallidus, externus
nTPM: 5.4
2395 Male, age 75, both hemispheres 5.7
2567 Female, age 72, unknown 5.7
2772 Female, age 79, unknown 5.6
2646 Male, age 61, right hemisphere 5.1
1996 Male, age 80, right hemisphere 5.0
Globus pallidus, internus
nTPM: 5.6
2483 Female, age 94, right hemisphere 6.1
2287 Male, age 75, right hemisphere 5.9
1818 Male, age 74, unknown 5.8
2566 Female, age 72, unknown 5.5
2778 Female, age 91, both hemispheres 5.4
2037 Male, age 80, right hemisphere 5.3
2111 Female, age 85, right hemisphere 5.3
Nucleus accumbens
nTPM: 8.9
1783 Male, age 74, unknown 10.5
2824 Male, age 61, right hemisphere 9.9
1856 Female, age 91, right hemisphere 9.8
1806 Female, age 85, left hemisphere 9.4
2286 Male, age 75, left hemisphere 8.6
2732 Male, age 80, right hemisphere 8.3
2698 Female, age 72, unknown 7.3
2391 Female, age 94, left hemisphere 7.2
Nucleus basalis of Meynert
nTPM: 8.2
2393 Male, age 80, right hemisphere 10.7
2484 Female, age 94, left hemisphere 8.5
2821 Male, age 75, both hemispheres 7.8
2569 Male, age 61, both hemispheres 5.9
Nucleus of the diagonal band
nTPM: 8.4
2029 Male, age 61, right hemisphere 9.2
2775 Male, age 80, right hemisphere 8.8
1812 Female, age 91, both hemispheres 8.4
2195 Female, age 85, both hemispheres 8.3
1979 Male, age 74, unknown 7.5
Olfactory tubercle
nTPM: 8.6
2856 Male, age 75, right hemisphere 9.2
2487 Female, age 94, left hemisphere 8.8
1998 Female, age 91, both hemispheres 8.3
1846 Male, age 80, right hemisphere 8.0
Putamen
nTPM: 9.5
2466 Female, age 79, unknown 11.7
1829 Male, age 74, unknown 11.4
1838 Male, age 80, right hemisphere 10.8
1937 Female, age 91, right hemisphere 9.1
2489 Female, age 72, unknown 8.6
2647 Male, age 75, left hemisphere 7.5
2482 Female, age 94, left hemisphere 7.4
Septal nuclei
nTPM: 8.1
2629 Female, age 94, right hemisphere 10.6
2009 Female, age 91, both hemispheres 10.0
2031 Female, age 72, unknown 8.3
1960 Male, age 74, unknown 7.7
2199 Male, age 80, right hemisphere 7.2
2059 Female, age 85, both hemispheres 6.9
2394 Male, age 61, left hemisphere 6.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.6
Samples: 246

Max nTPM: 35.1
Min nTPM: 2.5
Std nTPM: 4.7
Median nTPM: 8.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 35.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 31.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 29.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 28.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 27.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 26.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 25.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 24.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 20.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 19.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 18.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.1
Samples: 246

Max nTPM: 33.6
Min nTPM: 2.3
Std nTPM: 4.1
Median nTPM: 7.6
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 33.6
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 26.4
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 26.3
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 23.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 22.1
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 21.4
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 20.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 19.9
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 19.8
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 19.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 18.5
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Brain - Putamen (basal ganglia)
Average nTPM: 6.9
Samples: 205

Max nTPM: 13.9
Min nTPM: 1.9
Std nTPM: 2.5
Median nTPM: 6.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 13.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 13.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 13.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 12.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 12.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 12.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 12.2
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 12.2
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 11.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 11.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 11.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 88.2
FF:10164-103B2 76 years, female 88.2
Globus pallidus
Scaled Tags Per Million: 42.0
FF:10175-103C4 60 years, female 52.0
FF:10161-103A8 76 years, female 31.9
Nucleus accumbens
Scaled Tags Per Million: 45.2
FF:10037-101F1 23-56 years, mixed 45.2
Putamen
Scaled Tags Per Million: 79.3
FF:10176-103C5 60 years, female 79.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.2
Pig sample Sample description nTPM
Caudate
nTPM: 24.2
Samples: 4

Max nTPM: 25.6
Min nTPM: 23.4
Sample A Female 24.0
Sample B Female 23.4
Sample C Male 23.9
Sample D Male 25.6
Putamen
nTPM: 22.9
Samples: 4

Max nTPM: 29.5
Min nTPM: 10.9
Sample A Female 10.9
Sample B Female 25.7
Sample C Male 29.5
Sample D Male 25.4
Septum
nTPM: 12.1
Samples: 4

Max nTPM: 13.9
Min nTPM: 8.5
Sample A Female 12.6
Sample B Female 13.9
Sample C Male 8.5
Sample D Male 13.4
Ventral pallidum
nTPM: 14.8
Samples: 4

Max nTPM: 17.9
Min nTPM: 7.3
Sample A Female 17.3
Sample B Female 16.6
Sample C Male 7.3
Sample D Male 17.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.4
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.2
Sample A Male 13.3
Sample B Male 13.4
Sample C Female 11.2
Sample D Female 11.5
Septum
nTPM: 6.3
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.2
Sample A Male 5.2
Sample B Male 6.0
Sample C Female 6.6
Sample D Female 7.3
Ventral forebrain
nTPM: 6.0
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.7
Sample A Male 6.5
Sample B Male 6.7
Sample C Female 4.7
Sample D Female 5.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
69526492 Antisense, RP_050419_04_H12, Mouse strain C57BL/6J (56 days, male) 1.4
Pallidum
Expression energy: 0.3
69526492 Antisense, RP_050419_04_H12, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

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