MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:226.5 nTPM
HPA:226.5 nTPM
GTEx:206.0 nTPM
FANTOM5:1088.3 Scaled Tags Per Million
Pig:350.7 nTPM
Mouse:338.8 nTPM
Allen mouse:7.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 226.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 176.2
2586 Male, age 75, left hemisphere 187.1
2666 Male, age 74, left hemisphere 183.5
1870 Female, age 42, unknown 182.0
2019 Male, age 18, unknown 178.7
2411 Female, age 72, unknown 176.2
2219 Male, age 76, both hemispheres 173.5
1827 Male, age 72, unknown 172.3
2828 Female, age 72, unknown 171.5
1833 Male, age 53, unknown 170.6
1830 Male, age 51, unknown 166.5
Dorsal raphe nucleus
nTPM: 195.8
2047 Male, age 72, unknown 234.3
2750 Male, age 76, both hemispheres 201.7
2298 Female, age 72, unknown 190.6
1828 Male, age 53, unknown 184.9
2016 Female, age 72, unknown 167.3
Inferior colliculus
nTPM: 168.7
1890 Male, age 53, unknown 174.3
1848 Female, age 42, unknown 168.2
2097 Female, age 72, unknown 167.8
2849 Male, age 72, unknown 164.5
Median raphe nucleus
nTPM: 226.5
2220 Male, age 76, midline 226.5
Pedunculopontine tegmental nucleus
nTPM: 173.7
2334 Male, age 80, both hemispheres 182.7
2338 Male, age 61, both hemispheres 171.1
1921 Female, age 85, both hemispheres 167.3
Periaquaductal grey, anterior
nTPM: 172.3
1947 Male, age 18, unknown 184.7
1795 Male, age 51, unknown 170.4
2502 Female, age 75, unknown 161.8
Periaquaductal grey, dorsal
nTPM: 172.5
2850 Male, age 76, both hemispheres 185.8
1840 Male, age 53, unknown 174.3
1831 Male, age 72, unknown 171.5
2464 Female, age 72, unknown 158.6
Periaquaductal grey, lateral
nTPM: 164.6
2053 Male, age 18, unknown 167.2
2272 Male, age 74, both hemispheres 164.2
2140 Male, age 76, both hemispheres 162.5
Pretectal area
nTPM: 181.9
1817 Female, age 42, unknown 203.6
1816 Male, age 51, unknown 201.7
1944 Female, age 72, unknown 199.6
1815 Male, age 53, unknown 196.9
2007 Male, age 72, unknown 188.4
2667 Female, age 75, unknown 185.3
2407 Male, age 75, both hemispheres 178.9
2825 Male, age 18, unknown 165.5
2273 Male, age 74, both hemispheres 165.1
2224 Female, age 72, unknown 162.9
2316 Male, age 76, right hemisphere 152.5
Red nucleus
nTPM: 180.1
1821 Female, age 72, unknown 206.3
2725 Female, age 75, unknown 201.9
1954 Female, age 42, unknown 183.5
2503 Female, age 72, unknown 182.5
1904 Male, age 53, unknown 180.6
1865 Male, age 51, unknown 179.9
2785 Male, age 18, unknown 176.7
2588 Male, age 74, left hemisphere 176.4
2584 Male, age 75, left hemisphere 176.2
2769 Male, age 72, unknown 168.1
2227 Male, age 72, unknown 165.3
2823 Male, age 76, right hemisphere 163.9
Substantia nigra
nTPM: 199.4
1916 Female, age 42, unknown 222.6
1851 Male, age 51, unknown 210.3
2241 Male, age 72, unknown 208.4
2665 Male, age 74, both hemispheres 204.4
1889 Female, age 72, unknown 199.2
1941 Male, age 53, unknown 198.5
2409 Female, age 72, unknown 196.9
2699 Male, age 18, unknown 194.9
2583 Male, age 75, right hemisphere 187.9
2590 Female, age 75, unknown 171.3
Superior colliculus
nTPM: 176.5
2664 Male, age 75, both hemispheres 194.1
2668 Female, age 75, unknown 189.1
2087 Female, age 72, unknown 183.7
2261 Male, age 18, unknown 180.0
1796 Male, age 53, unknown 174.2
2587 Male, age 74, left hemisphere 172.4
1913 Female, age 42, unknown 172.0
1895 Male, age 76, right hemisphere 168.6
1995 Male, age 72, unknown 166.2
1839 Male, age 51, unknown 164.9
Ventral tegmental area
nTPM: 187.9
1915 Female, age 42, unknown 197.3
2218 Male, age 76, both hemispheres 196.9
2223 Female, age 72, unknown 187.4
2410 Female, age 72, unknown 184.0
1942 Male, age 51, unknown 182.1
2021 Male, age 53, unknown 179.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 206.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 206.0
Samples: 139

Max nTPM: 322.4
Min nTPM: 127.8
Std nTPM: 33.5
Median nTPM: 205.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 322.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 318.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 300.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 277.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 275.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 269.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 267.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 264.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 259.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 256.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 255.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1088.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1088.3
FF:10158-103A5 76 years, female 1088.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 350.7
Pig sample Sample description nTPM
Midbrain
nTPM: 333.4
Samples: 4

Max nTPM: 404.4
Min nTPM: 275.9
Sample A Female 404.4
Sample B Female 291.9
Sample C Male 361.3
Sample D Male 275.9
Periaqueductal gray
nTPM: 263.9
Samples: 3

Max nTPM: 277.6
Min nTPM: 250.8
Sample B Female 263.2
Sample C Male 277.6
Sample D Male 250.8
Substantia nigra
nTPM: 300.0
Samples: 4

Max nTPM: 348.5
Min nTPM: 264.5
Sample A Female 348.5
Sample B Female 279.2
Sample C Male 307.6
Sample D Male 264.5
Superior colliculi
nTPM: 350.7
Samples: 4

Max nTPM: 368.7
Min nTPM: 331.5
Sample A Female 351.7
Sample B Female 351.0
Sample C Male 368.7
Sample D Male 331.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 338.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 338.8
Samples: 4

Max nTPM: 354.9
Min nTPM: 316.2
Sample A Male 316.2
Sample B Male 347.2
Sample C Female 354.9
Sample D Female 336.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
69671965 Antisense, RP_050428_02_G01, Mouse strain C57BL/6J (56 days, male) 14.8
70795766 Antisense, RP_050712_01_H11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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