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BIRC2
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  • BIRC2
PROTEIN STRUCTURE
ANTIBODIES
AND
VALIDATION
Protein structures
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

BIRC2
Synonyms API1, c-IAP1, cIAP1, hiap-2, MIHB, RNF48
Gene descriptioni

Full gene name according to HGNC.

Baculoviral IAP repeat containing 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Cancer-related genes
Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Read more
Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q22.2
Chromosome location (bp) 102347211 - 102378670
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000110330 (version 103.38)
Entrez gene 329
HGNC HGNC:590
UniProt Q13490 (UniProt - Evidence at protein level)
neXtProt NX_Q13490
Antibodypedia BIRC2 antibodies


PROTEIN STRUCTUREi

The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).

In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl

Read more

Predicted


Description: Structure prediction from Alphafold project. Structure version 2

# Chains: 1      # Clinical variants: 0      # Population variants: 352

Antigens:

Off
On

Variants:

Off
Clinical
Population

Color scheme:

Confidence
Residue index
Chain name

Autorotate:

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On



PROTEIN BROWSERi

The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.

At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.

Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).

The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).

If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.

Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
BIRC2-201
BIRC2-202
BIRC2-206
BIRC2-207
BIRC2-208
BIRC2-209
BIRC2-210
BIRC2-213
BIRC2-214


PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant UniProt Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
BIRC2-201
ENSP00000227758
ENST00000227758
Q13490 [Direct mapping]
Baculoviral IAP repeat-containing protein 2
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0002756 [MyD88-independent toll-like receptor signaling pathway]
GO:0003713 [transcription coactivator activity]
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006915 [apoptotic process]
GO:0007166 [cell surface receptor signaling pathway]
GO:0007249 [I-kappaB kinase/NF-kappaB signaling]
GO:0008270 [zinc ion binding]
GO:0009898 [cytoplasmic side of plasma membrane]
GO:0010803 [regulation of tumor necrosis factor-mediated signaling pathway]
GO:0016579 [protein deubiquitination]
GO:0016740 [transferase activity]
GO:0031398 [positive regulation of protein ubiquitination]
GO:0033209 [tumor necrosis factor-mediated signaling pathway]
GO:0034121 [regulation of toll-like receptor signaling pathway]
GO:0035631 [CD40 receptor complex]
GO:0035666 [TRIF-dependent toll-like receptor signaling pathway]
GO:0038061 [NIK/NF-kappaB signaling]
GO:0039535 [regulation of RIG-I signaling pathway]
GO:0042127 [regulation of cell population proliferation]
GO:0042802 [identical protein binding]
GO:0042981 [regulation of apoptotic process]
GO:0043027 [cysteine-type endopeptidase inhibitor activity involved in apoptotic process]
GO:0043066 [negative regulation of apoptotic process]
GO:0043123 [positive regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043130 [ubiquitin binding]
GO:0043154 [negative regulation of cysteine-type endopeptidase activity involved in apoptotic process]
GO:0043161 [proteasome-mediated ubiquitin-dependent protein catabolic process]
GO:0045088 [regulation of innate immune response]
GO:0045595 [regulation of cell differentiation]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0046872 [metal ion binding]
GO:0047485 [protein N-terminus binding]
GO:0050727 [regulation of inflammatory response]
GO:0051087 [chaperone binding]
GO:0051726 [regulation of cell cycle]
GO:0060544 [regulation of necroptotic process]
GO:0060546 [negative regulation of necroptotic process]
GO:0061630 [ubiquitin protein ligase activity]
GO:0070424 [regulation of nucleotide-binding oligomerization domain containing signaling pathway]
GO:0098770 [FBXO family protein binding]
GO:1902523 [positive regulation of protein K63-linked ubiquitination]
GO:1902524 [positive regulation of protein K48-linked ubiquitination]
GO:1902527 [positive regulation of protein monoubiquitination]
GO:1990001 [inhibition of cysteine-type endopeptidase activity involved in apoptotic process]
GO:2000116 [regulation of cysteine-type endopeptidase activity]
Show all
618 aa
69.9 kDa
No 0
BIRC2-202
ENSP00000434708
ENST00000527465
E9PNM6 [Direct mapping]
Baculoviral IAP repeat-containing protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
149 aa
16.6 kDa
No 0
BIRC2-206
ENSP00000431723
ENST00000530675
Q13490 [Direct mapping]
Baculoviral IAP repeat-containing protein 2
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0002756 [MyD88-independent toll-like receptor signaling pathway]
GO:0003713 [transcription coactivator activity]
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006915 [apoptotic process]
GO:0007166 [cell surface receptor signaling pathway]
GO:0007249 [I-kappaB kinase/NF-kappaB signaling]
GO:0008270 [zinc ion binding]
GO:0009898 [cytoplasmic side of plasma membrane]
GO:0010803 [regulation of tumor necrosis factor-mediated signaling pathway]
GO:0016579 [protein deubiquitination]
GO:0016740 [transferase activity]
GO:0031398 [positive regulation of protein ubiquitination]
GO:0033209 [tumor necrosis factor-mediated signaling pathway]
GO:0034121 [regulation of toll-like receptor signaling pathway]
GO:0035631 [CD40 receptor complex]
GO:0035666 [TRIF-dependent toll-like receptor signaling pathway]
GO:0038061 [NIK/NF-kappaB signaling]
GO:0039535 [regulation of RIG-I signaling pathway]
GO:0042127 [regulation of cell population proliferation]
GO:0042802 [identical protein binding]
GO:0042981 [regulation of apoptotic process]
GO:0043027 [cysteine-type endopeptidase inhibitor activity involved in apoptotic process]
GO:0043066 [negative regulation of apoptotic process]
GO:0043123 [positive regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043130 [ubiquitin binding]
GO:0043154 [negative regulation of cysteine-type endopeptidase activity involved in apoptotic process]
GO:0043161 [proteasome-mediated ubiquitin-dependent protein catabolic process]
GO:0045088 [regulation of innate immune response]
GO:0045595 [regulation of cell differentiation]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0046872 [metal ion binding]
GO:0047485 [protein N-terminus binding]
GO:0050727 [regulation of inflammatory response]
GO:0051087 [chaperone binding]
GO:0051726 [regulation of cell cycle]
GO:0060544 [regulation of necroptotic process]
GO:0060546 [negative regulation of necroptotic process]
GO:0061630 [ubiquitin protein ligase activity]
GO:0070424 [regulation of nucleotide-binding oligomerization domain containing signaling pathway]
GO:0098770 [FBXO family protein binding]
GO:1902523 [positive regulation of protein K63-linked ubiquitination]
GO:1902524 [positive regulation of protein K48-linked ubiquitination]
GO:1902527 [positive regulation of protein monoubiquitination]
GO:1990001 [inhibition of cysteine-type endopeptidase activity involved in apoptotic process]
GO:2000116 [regulation of cysteine-type endopeptidase activity]
Show all
569 aa
64.1 kDa
No 0
BIRC2-207
ENSP00000436741
ENST00000531259
E9PI77 [Direct mapping]
Baculoviral IAP repeat-containing protein 2
Show all
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0042981 [regulation of apoptotic process]
GO:0046872 [metal ion binding]
Show all
139 aa
15.8 kDa
No 0
BIRC2-208
ENSP00000434979
ENST00000532672
E9PMH5 [Direct mapping]
Baculoviral IAP repeat-containing protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0042981 [regulation of apoptotic process]
GO:0046872 [metal ion binding]
Show all
597 aa
67.5 kDa
No 0
BIRC2-209
ENSP00000432410
ENST00000532832
E9PQZ9 [Direct mapping]
Baculoviral IAP repeat-containing protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
79 aa
8.9 kDa
No 0
BIRC2-210
ENSP00000433851
ENST00000533742
E9PIW1 [Direct mapping]
Baculoviral IAP repeat-containing protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005737 [cytoplasm]
GO:0042981 [regulation of apoptotic process]
Show all
182 aa
20.4 kDa
No 0
BIRC2-213
ENSP00000477613
ENST00000613397
Q13490 [Direct mapping]
Baculoviral IAP repeat-containing protein 2
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0001666 [response to hypoxia]
GO:0001741 [XY body]
GO:0001890 [placenta development]
GO:0002756 [MyD88-independent toll-like receptor signaling pathway]
GO:0003713 [transcription coactivator activity]
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006915 [apoptotic process]
GO:0007166 [cell surface receptor signaling pathway]
GO:0007249 [I-kappaB kinase/NF-kappaB signaling]
GO:0008270 [zinc ion binding]
GO:0009898 [cytoplasmic side of plasma membrane]
GO:0010243 [response to organonitrogen compound]
GO:0010803 [regulation of tumor necrosis factor-mediated signaling pathway]
GO:0014070 [response to organic cyclic compound]
GO:0016579 [protein deubiquitination]
GO:0016740 [transferase activity]
GO:0031398 [positive regulation of protein ubiquitination]
GO:0032991 [protein-containing complex]
GO:0033209 [tumor necrosis factor-mediated signaling pathway]
GO:0034121 [regulation of toll-like receptor signaling pathway]
GO:0035631 [CD40 receptor complex]
GO:0035666 [TRIF-dependent toll-like receptor signaling pathway]
GO:0038061 [NIK/NF-kappaB signaling]
GO:0039535 [regulation of RIG-I signaling pathway]
GO:0042127 [regulation of cell population proliferation]
GO:0042802 [identical protein binding]
GO:0042981 [regulation of apoptotic process]
GO:0043027 [cysteine-type endopeptidase inhibitor activity involved in apoptotic process]
GO:0043066 [negative regulation of apoptotic process]
GO:0043123 [positive regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043130 [ubiquitin binding]
GO:0043154 [negative regulation of cysteine-type endopeptidase activity involved in apoptotic process]
GO:0043161 [proteasome-mediated ubiquitin-dependent protein catabolic process]
GO:0044877 [protein-containing complex binding]
GO:0045088 [regulation of innate immune response]
GO:0045121 [membrane raft]
GO:0045471 [response to ethanol]
GO:0045595 [regulation of cell differentiation]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0046872 [metal ion binding]
GO:0047485 [protein N-terminus binding]
GO:0050727 [regulation of inflammatory response]
GO:0051087 [chaperone binding]
GO:0051591 [response to cAMP]
GO:0051726 [regulation of cell cycle]
GO:0060544 [regulation of necroptotic process]
GO:0060546 [negative regulation of necroptotic process]
GO:0061630 [ubiquitin protein ligase activity]
GO:0070266 [necroptotic process]
GO:0070424 [regulation of nucleotide-binding oligomerization domain containing signaling pathway]
GO:0071356 [cellular response to tumor necrosis factor]
GO:0098770 [FBXO family protein binding]
GO:1901222 [regulation of NIK/NF-kappaB signaling]
GO:1902443 [negative regulation of ripoptosome assembly involved in necroptotic process]
GO:1902523 [positive regulation of protein K63-linked ubiquitination]
GO:1902524 [positive regulation of protein K48-linked ubiquitination]
GO:1902527 [positive regulation of protein monoubiquitination]
GO:1902916 [positive regulation of protein polyubiquitination]
GO:1990001 [inhibition of cysteine-type endopeptidase activity involved in apoptotic process]
GO:2000116 [regulation of cysteine-type endopeptidase activity]
GO:2000377 [regulation of reactive oxygen species metabolic process]
Show all
618 aa
69.9 kDa
No 0
BIRC2-214
ENSP00000484838
ENST00000621637
A0A087X2B2 [Direct mapping]
Baculoviral IAP repeat-containing protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0042981 [regulation of apoptotic process]
Show all
534 aa
60.4 kDa
No 0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.