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SLC1A2
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:546.9 nTPM
HPA:546.9 nTPM
GTEx:347.0 nTPM
FANTOM5:1104.9 Scaled Tags Per Million
Pig:537.3 nTPM
Mouse:488.4 nTPM
Allen mouse:14.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 546.9
Sample id Sample description nTPM
Amygdala
nTPM: 542.2
2514 Male, age 75, right hemisphere 870.2
2517 Female, age 94, left hemisphere 583.3
1987 Female, age 91, left hemisphere 500.1
2814 Male, age 76, right hemisphere 378.7
2695 Female, age 67, right hemisphere 378.5
Basal amygdala
nTPM: 546.9
2609 Male, age 75, right hemisphere 781.6
2243 Female, age 91, right hemisphere 602.5
2110 Male, age 80, left hemisphere 580.4
2685 Female, age 94, left hemisphere 509.0
1955 Male, age 76, both hemispheres 432.9
2827 Female, age 67, right hemisphere 375.0
Central amygdala
nTPM: 480.9
2239 Male, age 80, left hemisphere 549.1
2826 Female, age 94, left hemisphere 548.2
2515 Male, age 75, right hemisphere 481.5
2701 Female, age 91, right hemisphere 422.0
1905 Male, age 76, both hemispheres 403.9
Corticomedial amygdala
nTPM: 544.1
2428 Male, age 75, right hemisphere 700.0
2829 Male, age 80, left hemisphere 625.3
2242 Female, age 91, right hemisphere 551.0
2429 Female, age 94, left hemisphere 540.6
2535 Female, age 67, right hemisphere 433.1
2240 Male, age 76, both hemispheres 414.5
Lateral amygdala
nTPM: 514.1
2516 Male, age 75, right hemisphere 697.1
2534 Female, age 94, left hemisphere 550.8
2255 Female, age 91, right hemisphere 533.8
2256 Male, age 80, left hemisphere 525.3
1883 Male, age 76, both hemispheres 443.3
2830 Female, age 67, right hemisphere 334.0
Stria terminalis, bed nucleus
nTPM: 384.6
2486 Female, age 94, both hemispheres 407.8
1974 Female, age 91, both hemispheres 383.0
2201 Male, age 74, unknown 362.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 347.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 347.0
Samples: 152

Max nTPM: 950.5
Min nTPM: 2.0
Std nTPM: 204.6
Median nTPM: 326.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 950.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 938.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 915.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 863.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 724.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 723.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 707.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 703.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 695.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 692.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 687.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 683.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 678.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 657.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 642.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 630.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 617.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 609.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 594.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 592.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 588.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 579.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 572.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 564.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 554.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 535.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 525.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 522.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 520.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 512.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 511.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 511.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 507.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 501.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 487.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 476.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 475.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 469.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 464.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 459.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 459.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 455.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 455.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 453.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 449.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 445.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 439.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 431.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 430.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 425.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 424.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 423.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 420.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 411.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 409.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 404.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 399.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 399.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 398.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 395.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 394.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 385.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 383.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 381.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 379.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 378.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 376.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 374.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 363.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 362.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 360.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 359.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 353.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 352.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 347.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 335.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 318.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 317.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 310.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 298.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 298.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 295.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 294.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 290.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 286.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 283.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 279.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 277.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 277.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 274.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 272.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 267.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 253.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 243.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 237.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 237.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 236.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 227.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 222.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 222.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 222.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 215.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 214.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 214.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 213.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 213.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 212.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 210.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 209.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 208.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 200.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 197.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 194.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 188.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 187.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 186.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 184.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 181.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 181.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 177.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 176.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 174.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 172.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 166.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 165.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 163.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 147.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 146.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 138.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 130.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 118.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 116.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 115.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 114.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 111.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 107.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 103.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 96.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 88.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 85.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 78.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 62.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 56.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 50.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 47.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 44.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 38.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 33.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 31.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 27.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 21.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1104.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1104.9
FF:10151-102I7 76 years, female 1104.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 537.3
Pig sample Sample description nTPM
Amygdala
nTPM: 537.3
Samples: 4

Max nTPM: 573.2
Min nTPM: 450.9
Sample A Female 450.9
Sample B Female 573.2
Sample C Male 558.2
Sample D Male 566.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 488.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 488.4
Samples: 4

Max nTPM: 573.2
Min nTPM: 424.8
Sample A Male 424.8
Sample B Male 452.9
Sample C Female 573.2
Sample D Female 502.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.7
73521823 Antisense, RP_051101_03_B07, Mouse strain C57BL/6J (56 days, male) 16.5
69873839 Antisense, RP_050512_02_B03, Mouse strain C57BL/6J (56 days, male) 12.8

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