MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:533.6 nTPM
HPA:533.6 nTPM
GTEx:78.4 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:213.1 nTPM
Mouse:255.2 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 533.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 387.2
2586 Male, age 75, left hemisphere 565.5
2828 Female, age 72, unknown 405.8
1827 Male, age 72, unknown 395.4
2219 Male, age 76, both hemispheres 382.4
1833 Male, age 53, unknown 378.5
2019 Male, age 18, unknown 358.4
1830 Male, age 51, unknown 349.9
2666 Male, age 74, left hemisphere 349.9
1870 Female, age 42, unknown 348.9
2411 Female, age 72, unknown 337.4
Dorsal raphe nucleus
nTPM: 398.5
2047 Male, age 72, unknown 449.2
1828 Male, age 53, unknown 441.1
2016 Female, age 72, unknown 383.3
2298 Female, age 72, unknown 374.0
2750 Male, age 76, both hemispheres 344.9
Inferior colliculus
nTPM: 533.6
1848 Female, age 42, unknown 613.9
2097 Female, age 72, unknown 518.2
1890 Male, age 53, unknown 501.1
2849 Male, age 72, unknown 501.1
Median raphe nucleus
nTPM: 329.7
2220 Male, age 76, midline 329.7
Pedunculopontine tegmental nucleus
nTPM: 334.1
1921 Female, age 85, both hemispheres 399.3
2334 Male, age 80, both hemispheres 338.9
2338 Male, age 61, both hemispheres 264.1
Periaquaductal grey, anterior
nTPM: 404.5
2502 Female, age 75, unknown 452.3
1947 Male, age 18, unknown 394.3
1795 Male, age 51, unknown 366.8
Periaquaductal grey, dorsal
nTPM: 411.4
2464 Female, age 72, unknown 475.6
1840 Male, age 53, unknown 472.7
2850 Male, age 76, both hemispheres 385.7
1831 Male, age 72, unknown 311.5
Periaquaductal grey, lateral
nTPM: 357.4
2140 Male, age 76, both hemispheres 405.9
2053 Male, age 18, unknown 384.9
2272 Male, age 74, both hemispheres 281.6
Pretectal area
nTPM: 392.0
1817 Female, age 42, unknown 495.1
1816 Male, age 51, unknown 434.4
2007 Male, age 72, unknown 416.7
1944 Female, age 72, unknown 402.6
2667 Female, age 75, unknown 401.8
2825 Male, age 18, unknown 399.4
1815 Male, age 53, unknown 392.6
2316 Male, age 76, right hemisphere 380.7
2224 Female, age 72, unknown 368.8
2407 Male, age 75, both hemispheres 327.4
2273 Male, age 74, both hemispheres 292.7
Red nucleus
nTPM: 421.6
1821 Female, age 72, unknown 491.9
1954 Female, age 42, unknown 489.8
2769 Male, age 72, unknown 488.1
2227 Male, age 72, unknown 477.6
2588 Male, age 74, left hemisphere 469.6
2503 Female, age 72, unknown 429.0
1865 Male, age 51, unknown 417.6
2823 Male, age 76, right hemisphere 416.7
1904 Male, age 53, unknown 412.7
2785 Male, age 18, unknown 339.7
2725 Female, age 75, unknown 332.3
2584 Male, age 75, left hemisphere 294.6
Substantia nigra
nTPM: 375.3
1916 Female, age 42, unknown 464.0
1889 Female, age 72, unknown 451.8
2699 Male, age 18, unknown 399.8
2241 Male, age 72, unknown 385.3
1851 Male, age 51, unknown 368.8
2665 Male, age 74, both hemispheres 362.2
1941 Male, age 53, unknown 338.2
2583 Male, age 75, right hemisphere 332.8
2409 Female, age 72, unknown 325.7
2590 Female, age 75, unknown 324.6
Superior colliculus
nTPM: 395.5
2668 Female, age 75, unknown 493.0
1895 Male, age 76, right hemisphere 444.3
2087 Female, age 72, unknown 422.4
2664 Male, age 75, both hemispheres 417.1
1839 Male, age 51, unknown 416.5
2261 Male, age 18, unknown 409.6
1796 Male, age 53, unknown 384.0
2587 Male, age 74, left hemisphere 341.1
1913 Female, age 42, unknown 314.8
1995 Male, age 72, unknown 312.0
Ventral tegmental area
nTPM: 349.3
2410 Female, age 72, unknown 379.0
1915 Female, age 42, unknown 368.7
2223 Female, age 72, unknown 360.2
1942 Male, age 51, unknown 342.4
2218 Male, age 76, both hemispheres 331.9
2021 Male, age 53, unknown 313.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.4
Samples: 139

Max nTPM: 256.7
Min nTPM: 5.6
Std nTPM: 55.0
Median nTPM: 63.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 256.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 242.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 237.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 237.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 232.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 198.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 198.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 186.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 186.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 180.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 178.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 213.1
Pig sample Sample description nTPM
Midbrain
nTPM: 213.1
Samples: 4

Max nTPM: 328.5
Min nTPM: 81.9
Sample A Female 81.9
Sample B Female 257.2
Sample C Male 328.5
Sample D Male 184.9
Periaqueductal gray
nTPM: 192.2
Samples: 3

Max nTPM: 270.3
Min nTPM: 140.2
Sample B Female 270.3
Sample C Male 166.0
Sample D Male 140.2
Substantia nigra
nTPM: 162.6
Samples: 4

Max nTPM: 178.0
Min nTPM: 133.1
Sample A Female 174.4
Sample B Female 133.1
Sample C Male 178.0
Sample D Male 164.8
Superior colliculi
nTPM: 196.5
Samples: 4

Max nTPM: 264.3
Min nTPM: 125.6
Sample A Female 186.7
Sample B Female 125.6
Sample C Male 264.3
Sample D Male 209.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 255.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 255.2
Samples: 4

Max nTPM: 264.9
Min nTPM: 233.4
Sample A Male 233.4
Sample B Male 264.9
Sample C Female 259.0
Sample D Female 263.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
73521823 Antisense, RP_051101_03_B07, Mouse strain C57BL/6J (56 days, male) 8.8
69873839 Antisense, RP_050512_02_B03, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.