MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:144.9 nTPM
HPA:144.9 nTPM
GTEx:148.2 nTPM
FANTOM5:106.6 Scaled Tags Per Million
Pig:86.9 nTPM
Mouse:169.6 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 144.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 139.6
2019 Male, age 18, unknown 146.5
2411 Female, age 72, unknown 143.0
2586 Male, age 75, left hemisphere 142.3
1827 Male, age 72, unknown 140.0
2219 Male, age 76, both hemispheres 140.0
2828 Female, age 72, unknown 139.1
2666 Male, age 74, left hemisphere 138.6
1833 Male, age 53, unknown 136.6
1870 Female, age 42, unknown 136.3
1830 Male, age 51, unknown 133.9
Dorsal raphe nucleus
nTPM: 140.8
2298 Female, age 72, unknown 148.4
1828 Male, age 53, unknown 142.8
2047 Male, age 72, unknown 142.1
2750 Male, age 76, both hemispheres 138.3
2016 Female, age 72, unknown 132.5
Inferior colliculus
nTPM: 142.2
2097 Female, age 72, unknown 146.7
1890 Male, age 53, unknown 141.8
1848 Female, age 42, unknown 140.9
2849 Male, age 72, unknown 139.5
Median raphe nucleus
nTPM: 138.4
2220 Male, age 76, midline 138.4
Pedunculopontine tegmental nucleus
nTPM: 138.9
2334 Male, age 80, both hemispheres 142.1
1921 Female, age 85, both hemispheres 141.1
2338 Male, age 61, both hemispheres 133.5
Periaquaductal grey, anterior
nTPM: 143.1
1795 Male, age 51, unknown 144.0
1947 Male, age 18, unknown 142.7
2502 Female, age 75, unknown 142.6
Periaquaductal grey, dorsal
nTPM: 135.4
1840 Male, age 53, unknown 139.3
1831 Male, age 72, unknown 134.5
2850 Male, age 76, both hemispheres 134.1
2464 Female, age 72, unknown 133.9
Periaquaductal grey, lateral
nTPM: 137.5
2272 Male, age 74, both hemispheres 146.6
2053 Male, age 18, unknown 134.8
2140 Male, age 76, both hemispheres 130.9
Pretectal area
nTPM: 144.9
2007 Male, age 72, unknown 157.0
1817 Female, age 42, unknown 156.4
1944 Female, age 72, unknown 151.0
2667 Female, age 75, unknown 149.9
1816 Male, age 51, unknown 149.6
2273 Male, age 74, both hemispheres 144.4
1815 Male, age 53, unknown 141.9
2224 Female, age 72, unknown 141.6
2316 Male, age 76, right hemisphere 136.2
2825 Male, age 18, unknown 136.1
2407 Male, age 75, both hemispheres 129.7
Red nucleus
nTPM: 141.0
2725 Female, age 75, unknown 147.6
2785 Male, age 18, unknown 147.3
2503 Female, age 72, unknown 146.2
1821 Female, age 72, unknown 144.8
2769 Male, age 72, unknown 142.0
1904 Male, age 53, unknown 141.4
2227 Male, age 72, unknown 140.4
2588 Male, age 74, left hemisphere 139.7
1954 Female, age 42, unknown 139.2
1865 Male, age 51, unknown 138.6
2823 Male, age 76, right hemisphere 134.9
2584 Male, age 75, left hemisphere 130.1
Substantia nigra
nTPM: 144.2
1916 Female, age 42, unknown 158.9
1889 Female, age 72, unknown 150.7
2665 Male, age 74, both hemispheres 149.5
1851 Male, age 51, unknown 149.0
1941 Male, age 53, unknown 146.0
2699 Male, age 18, unknown 140.9
2409 Female, age 72, unknown 138.8
2583 Male, age 75, right hemisphere 138.4
2590 Female, age 75, unknown 134.9
2241 Male, age 72, unknown 134.8
Superior colliculus
nTPM: 138.5
2087 Female, age 72, unknown 144.1
1796 Male, age 53, unknown 142.9
1839 Male, age 51, unknown 140.3
2587 Male, age 74, left hemisphere 139.6
2261 Male, age 18, unknown 139.1
1995 Male, age 72, unknown 137.7
2668 Female, age 75, unknown 136.7
1895 Male, age 76, right hemisphere 135.5
1913 Female, age 42, unknown 135.4
2664 Male, age 75, both hemispheres 133.5
Ventral tegmental area
nTPM: 143.5
2410 Female, age 72, unknown 153.2
1915 Female, age 42, unknown 148.0
2218 Male, age 76, both hemispheres 147.8
1942 Male, age 51, unknown 138.9
2223 Female, age 72, unknown 138.1
2021 Male, age 53, unknown 135.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 148.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 148.2
Samples: 139

Max nTPM: 297.1
Min nTPM: 66.9
Std nTPM: 38.1
Median nTPM: 144.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 297.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 272.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 255.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 233.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 226.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 220.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 215.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 213.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 213.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 209.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 206.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.6
FF:10158-103A5 76 years, female 106.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 86.9
Pig sample Sample description nTPM
Midbrain
nTPM: 77.8
Samples: 4

Max nTPM: 101.9
Min nTPM: 62.6
Sample A Female 101.9
Sample B Female 70.3
Sample C Male 76.2
Sample D Male 62.6
Periaqueductal gray
nTPM: 51.9
Samples: 3

Max nTPM: 56.5
Min nTPM: 43.9
Sample B Female 56.5
Sample C Male 55.2
Sample D Male 43.9
Substantia nigra
nTPM: 66.9
Samples: 4

Max nTPM: 103.3
Min nTPM: 47.1
Sample A Female 103.3
Sample B Female 53.1
Sample C Male 64.0
Sample D Male 47.1
Superior colliculi
nTPM: 86.9
Samples: 4

Max nTPM: 105.8
Min nTPM: 69.4
Sample A Female 105.8
Sample B Female 74.9
Sample C Male 97.6
Sample D Male 69.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 169.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.7
Samples: 4

Max nTPM: 193.7
Min nTPM: 151.0
Sample A Male 193.7
Sample B Male 159.7
Sample C Female 151.0
Sample D Female 174.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
74819243 Antisense, RP_060315_02_C07, Mouse strain C57BL/6J (56 days, male) 8.0
68910967 Antisense, RP_050118_01_A01, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.