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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:141.2 nTPM
HPA:141.2 nTPM
GTEx:152.3 nTPM
FANTOM5:107.6 Scaled Tags Per Million
Pig:44.4 nTPM
Mouse:194.4 nTPM
Allen mouse:6.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 141.2
Sample id Sample description nTPM
Amygdala
nTPM: 141.2
2814 Male, age 76, right hemisphere 149.2
2695 Female, age 67, right hemisphere 143.2
1987 Female, age 91, left hemisphere 139.5
2517 Female, age 94, left hemisphere 137.7
2514 Male, age 75, right hemisphere 136.6
Basal amygdala
nTPM: 137.2
2110 Male, age 80, left hemisphere 140.3
2609 Male, age 75, right hemisphere 140.1
2685 Female, age 94, left hemisphere 139.4
1955 Male, age 76, both hemispheres 138.2
2243 Female, age 91, right hemisphere 137.8
2827 Female, age 67, right hemisphere 127.7
Central amygdala
nTPM: 140.6
1905 Male, age 76, both hemispheres 148.9
2826 Female, age 94, left hemisphere 143.3
2239 Male, age 80, left hemisphere 140.1
2515 Male, age 75, right hemisphere 139.5
2701 Female, age 91, right hemisphere 131.4
Corticomedial amygdala
nTPM: 137.0
2242 Female, age 91, right hemisphere 140.2
2428 Male, age 75, right hemisphere 139.8
2829 Male, age 80, left hemisphere 139.7
2429 Female, age 94, left hemisphere 137.5
2240 Male, age 76, both hemispheres 134.3
2535 Female, age 67, right hemisphere 130.4
Lateral amygdala
nTPM: 137.1
1883 Male, age 76, both hemispheres 145.4
2534 Female, age 94, left hemisphere 145.4
2516 Male, age 75, right hemisphere 140.9
2255 Female, age 91, right hemisphere 135.2
2256 Male, age 80, left hemisphere 130.7
2830 Female, age 67, right hemisphere 125.0
Stria terminalis, bed nucleus
nTPM: 140.5
1974 Female, age 91, both hemispheres 145.1
2201 Male, age 74, unknown 139.8
2486 Female, age 94, both hemispheres 136.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 152.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 152.3
Samples: 152

Max nTPM: 438.7
Min nTPM: 70.1
Std nTPM: 52.0
Median nTPM: 145.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 438.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 384.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 362.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 327.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 241.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 238.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 231.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 231.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 228.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 226.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 222.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 218.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 218.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 213.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 212.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 204.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 195.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 195.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 195.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 193.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 193.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 188.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 188.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 184.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 183.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 183.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 183.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 183.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 181.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 180.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 179.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 178.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 175.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 174.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 173.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 171.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 171.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 169.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 167.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 166.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 166.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 165.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 165.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 164.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 164.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 162.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 162.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 161.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 160.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 160.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 159.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 157.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 157.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 157.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 157.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 156.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 155.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 155.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 155.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 155.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 154.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 152.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 151.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 150.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 150.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 150.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 150.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 149.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 149.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 149.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 147.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 146.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 146.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 145.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 145.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 145.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 145.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 143.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 142.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 142.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 142.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 142.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 141.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 141.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 140.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 140.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 140.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 139.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 139.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 139.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 137.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 137.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 136.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 135.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 135.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 135.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 135.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 134.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 133.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 133.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 132.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 131.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 129.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 129.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 126.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 124.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 123.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 123.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 122.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 122.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 122.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 121.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 121.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 120.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 119.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 118.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 118.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 118.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 117.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 116.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 116.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 116.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 116.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 115.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 113.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 112.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 112.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 109.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 109.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 108.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 104.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 102.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 102.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 102.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 102.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 100.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 99.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 98.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 96.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 94.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 93.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 89.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 88.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 86.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 86.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 86.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 71.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 71.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 70.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 107.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 107.6
FF:10151-102I7 76 years, female 107.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.4
Pig sample Sample description nTPM
Amygdala
nTPM: 44.4
Samples: 4

Max nTPM: 59.7
Min nTPM: 37.3
Sample A Female 59.7
Sample B Female 39.6
Sample C Male 40.8
Sample D Male 37.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 194.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 194.4
Samples: 4

Max nTPM: 201.3
Min nTPM: 187.5
Sample A Male 187.5
Sample B Male 201.3
Sample C Female 196.0
Sample D Female 192.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.8
74819243 Antisense, RP_060315_02_C07, Mouse strain C57BL/6J (56 days, male) 7.2
68910967 Antisense, RP_050118_01_A01, Mouse strain C57BL/6J (56 days, male) 6.4

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