MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:242.9 nTPM
HPA:242.9 nTPM
GTEx:318.2 nTPM
FANTOM5:228.5 Scaled Tags Per Million
Pig:356.4 nTPM
Mouse:1423.8 nTPM
Allen mouse:25.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 242.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 201.3
2019 Male, age 18, unknown 252.8
2411 Female, age 72, unknown 224.5
2219 Male, age 76, both hemispheres 223.8
1827 Male, age 72, unknown 220.8
2828 Female, age 72, unknown 197.8
1870 Female, age 42, unknown 191.3
1833 Male, age 53, unknown 187.9
2666 Male, age 74, left hemisphere 178.5
1830 Male, age 51, unknown 174.0
2586 Male, age 75, left hemisphere 161.5
Dorsal raphe nucleus
nTPM: 218.7
2298 Female, age 72, unknown 267.3
1828 Male, age 53, unknown 228.4
2750 Male, age 76, both hemispheres 209.7
2047 Male, age 72, unknown 205.6
2016 Female, age 72, unknown 182.4
Inferior colliculus
nTPM: 217.0
2097 Female, age 72, unknown 267.9
1890 Male, age 53, unknown 219.6
1848 Female, age 42, unknown 202.7
2849 Male, age 72, unknown 177.7
Median raphe nucleus
nTPM: 203.3
2220 Male, age 76, midline 203.3
Pedunculopontine tegmental nucleus
nTPM: 214.4
1921 Female, age 85, both hemispheres 232.1
2334 Male, age 80, both hemispheres 217.9
2338 Male, age 61, both hemispheres 193.2
Periaquaductal grey, anterior
nTPM: 207.1
1947 Male, age 18, unknown 215.9
1795 Male, age 51, unknown 208.3
2502 Female, age 75, unknown 197.2
Periaquaductal grey, dorsal
nTPM: 184.9
2464 Female, age 72, unknown 188.6
1840 Male, age 53, unknown 184.9
1831 Male, age 72, unknown 183.4
2850 Male, age 76, both hemispheres 182.5
Periaquaductal grey, lateral
nTPM: 199.1
2272 Male, age 74, both hemispheres 242.3
2053 Male, age 18, unknown 178.3
2140 Male, age 76, both hemispheres 176.8
Pretectal area
nTPM: 239.7
1816 Male, age 51, unknown 289.7
2007 Male, age 72, unknown 289.5
1817 Female, age 42, unknown 287.8
1944 Female, age 72, unknown 280.1
2667 Female, age 75, unknown 256.5
2273 Male, age 74, both hemispheres 245.3
1815 Male, age 53, unknown 242.7
2224 Female, age 72, unknown 214.3
2316 Male, age 76, right hemisphere 195.2
2825 Male, age 18, unknown 181.3
2407 Male, age 75, both hemispheres 154.7
Red nucleus
nTPM: 213.1
1821 Female, age 72, unknown 267.8
2785 Male, age 18, unknown 235.7
2725 Female, age 75, unknown 234.5
2503 Female, age 72, unknown 226.5
1954 Female, age 42, unknown 211.2
2823 Male, age 76, right hemisphere 210.3
1904 Male, age 53, unknown 207.0
1865 Male, age 51, unknown 205.9
2769 Male, age 72, unknown 205.6
2227 Male, age 72, unknown 205.4
2588 Male, age 74, left hemisphere 186.8
2584 Male, age 75, left hemisphere 160.4
Substantia nigra
nTPM: 242.9
1916 Female, age 42, unknown 300.5
1889 Female, age 72, unknown 273.4
1851 Male, age 51, unknown 271.3
1941 Male, age 53, unknown 264.3
2241 Male, age 72, unknown 259.6
2665 Male, age 74, both hemispheres 236.4
2409 Female, age 72, unknown 235.2
2699 Male, age 18, unknown 209.4
2590 Female, age 75, unknown 204.5
2583 Male, age 75, right hemisphere 174.8
Superior colliculus
nTPM: 204.0
2087 Female, age 72, unknown 262.7
2261 Male, age 18, unknown 219.3
1895 Male, age 76, right hemisphere 219.1
1796 Male, age 53, unknown 216.9
2587 Male, age 74, left hemisphere 210.5
2668 Female, age 75, unknown 200.5
1913 Female, age 42, unknown 192.1
1839 Male, age 51, unknown 188.8
1995 Male, age 72, unknown 184.8
2664 Male, age 75, both hemispheres 145.2
Ventral tegmental area
nTPM: 225.4
2410 Female, age 72, unknown 281.8
1915 Female, age 42, unknown 254.8
2218 Male, age 76, both hemispheres 254.4
1942 Male, age 51, unknown 200.0
2223 Female, age 72, unknown 184.6
2021 Male, age 53, unknown 176.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 318.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 318.2
Samples: 139

Max nTPM: 864.4
Min nTPM: 130.1
Std nTPM: 137.8
Median nTPM: 279.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 864.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 850.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 785.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 694.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 632.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 628.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 628.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 547.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 525.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 513.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 510.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 228.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 228.5
FF:10158-103A5 76 years, female 228.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 356.4
Pig sample Sample description nTPM
Midbrain
nTPM: 298.4
Samples: 4

Max nTPM: 411.2
Min nTPM: 243.6
Sample A Female 244.5
Sample B Female 243.6
Sample C Male 411.2
Sample D Male 294.2
Periaqueductal gray
nTPM: 208.8
Samples: 3

Max nTPM: 237.2
Min nTPM: 162.7
Sample B Female 226.6
Sample C Male 237.2
Sample D Male 162.7
Substantia nigra
nTPM: 263.6
Samples: 4

Max nTPM: 374.5
Min nTPM: 175.8
Sample A Female 374.5
Sample B Female 209.5
Sample C Male 294.6
Sample D Male 175.8
Superior colliculi
nTPM: 356.5
Samples: 4

Max nTPM: 487.5
Min nTPM: 275.2
Sample A Female 387.6
Sample B Female 275.2
Sample C Male 487.5
Sample D Male 275.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1423.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1423.8
Samples: 4

Max nTPM: 1445.1
Min nTPM: 1384.4
Sample A Male 1445.1
Sample B Male 1427.7
Sample C Female 1384.4
Sample D Female 1438.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 25.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.7
70528264 Antisense, RP_050623_02_C01, Mouse strain C57BL/6J (56 days, male) 25.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.