BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:66.2 nTPM
HPA:66.2 nTPM
GTEx:55.8 nTPM
FANTOM5:50.3 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:7.5 nTPM
Allen mouse:1.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA034659
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 66.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.9
2289 Male, age 61, right hemisphere 45.3
1854 Male, age 80, left hemisphere 43.8
2290 Female, age 72, unknown 43.8
2846 Female, age 79, unknown 43.5
2481 Female, age 94, left hemisphere 43.1
1781 Male, age 74, unknown 40.3
2288 Male, age 75, left hemisphere 39.9
1857 Female, age 85, left hemisphere 35.6
Claustrum
nTPM: 44.3
2292 Female, age 85, both hemispheres 52.8
1956 Male, age 74, unknown 48.1
2645 Female, age 72, unknown 47.2
2568 Male, age 61, both hemispheres 46.8
2196 Female, age 79, unknown 45.3
2284 Female, age 91, both hemispheres 42.9
2491 Male, age 75, both hemispheres 41.5
2392 Female, age 94, both hemispheres 37.3
2198 Male, age 80, both hemispheres 36.8
Globus pallidus, externus
nTPM: 66.2
2567 Female, age 72, unknown 93.6
2646 Male, age 61, right hemisphere 81.2
1996 Male, age 80, right hemisphere 59.6
2772 Female, age 79, unknown 54.7
2395 Male, age 75, both hemispheres 42.2
Globus pallidus, internus
nTPM: 61.8
2566 Female, age 72, unknown 77.7
2111 Female, age 85, right hemisphere 65.3
2483 Female, age 94, right hemisphere 63.5
1818 Male, age 74, unknown 61.2
2037 Male, age 80, right hemisphere 56.8
2778 Female, age 91, both hemispheres 56.6
2287 Male, age 75, right hemisphere 51.3
Nucleus accumbens
nTPM: 40.9
2698 Female, age 72, unknown 49.4
2732 Male, age 80, right hemisphere 46.3
2391 Female, age 94, left hemisphere 42.7
1783 Male, age 74, unknown 39.3
1806 Female, age 85, left hemisphere 39.3
2824 Male, age 61, right hemisphere 37.7
2286 Male, age 75, left hemisphere 37.6
1856 Female, age 91, right hemisphere 34.7
Nucleus basalis of Meynert
nTPM: 56.2
2569 Male, age 61, both hemispheres 84.7
2484 Female, age 94, left hemisphere 50.8
2821 Male, age 75, both hemispheres 45.7
2393 Male, age 80, right hemisphere 43.4
Nucleus of the diagonal band
nTPM: 32.9
2029 Male, age 61, right hemisphere 35.9
1979 Male, age 74, unknown 34.6
2775 Male, age 80, right hemisphere 31.8
1812 Female, age 91, both hemispheres 31.3
2195 Female, age 85, both hemispheres 30.9
Olfactory tubercle
nTPM: 33.8
2856 Male, age 75, right hemisphere 37.0
1846 Male, age 80, right hemisphere 34.6
1998 Female, age 91, both hemispheres 32.6
2487 Female, age 94, left hemisphere 30.8
Putamen
nTPM: 46.5
2489 Female, age 72, unknown 60.3
2647 Male, age 75, left hemisphere 54.5
1829 Male, age 74, unknown 48.7
2482 Female, age 94, left hemisphere 42.5
2466 Female, age 79, unknown 40.4
1838 Male, age 80, right hemisphere 39.8
1937 Female, age 91, right hemisphere 39.5
Septal nuclei
nTPM: 34.7
2394 Male, age 61, left hemisphere 44.6
2199 Male, age 80, right hemisphere 44.0
2059 Female, age 85, both hemispheres 36.4
2009 Female, age 91, both hemispheres 30.5
2031 Female, age 72, unknown 30.2
2629 Female, age 94, right hemisphere 29.6
1960 Male, age 74, unknown 27.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 55.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.5
Samples: 246

Max nTPM: 101.7
Min nTPM: 7.5
Std nTPM: 18.0
Median nTPM: 39.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 101.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 98.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 92.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 92.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 90.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 90.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 88.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 87.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 87.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 84.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 84.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.5
Samples: 246

Max nTPM: 107.1
Min nTPM: 12.0
Std nTPM: 18.0
Median nTPM: 29.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 107.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 105.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 100.1
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 97.2
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 89.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 86.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 84.5
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 83.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 80.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 80.6
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 79.9
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Brain - Putamen (basal ganglia)
Average nTPM: 55.8
Samples: 205

Max nTPM: 193.7
Min nTPM: 17.2
Std nTPM: 24.6
Median nTPM: 50.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 193.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 157.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 130.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 118.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 109.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 105.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 104.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 101.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 99.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 98.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 92.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.0
FF:10164-103B2 76 years, female 44.0
Globus pallidus
Scaled Tags Per Million: 50.3
FF:10161-103A8 76 years, female 69.9
FF:10175-103C4 60 years, female 30.7
Nucleus accumbens
Scaled Tags Per Million: 44.7
FF:10037-101F1 23-56 years, mixed 44.7
Putamen
Scaled Tags Per Million: 24.8
FF:10176-103C5 60 years, female 24.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Caudate
nTPM: 8.2
Samples: 4

Max nTPM: 9.7
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 7.8
Sample C Male 9.7
Sample D Male 8.8
Putamen
nTPM: 13.1
Samples: 4

Max nTPM: 16.7
Min nTPM: 8.8
Sample A Female 15.1
Sample B Female 8.8
Sample C Male 11.6
Sample D Male 16.7
Septum
nTPM: 9.5
Samples: 4

Max nTPM: 10.3
Min nTPM: 8.6
Sample A Female 9.8
Sample B Female 8.6
Sample C Male 10.3
Sample D Male 9.3
Ventral pallidum
nTPM: 12.0
Samples: 4

Max nTPM: 16.7
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 10.0
Sample C Male 16.7
Sample D Male 14.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.5
Samples: 4

Max nTPM: 9.9
Min nTPM: 5.1
Sample A Male 7.1
Sample B Male 9.9
Sample C Female 7.7
Sample D Female 5.1
Septum
nTPM: 4.9
Samples: 4

Max nTPM: 6.9
Min nTPM: 3.9
Sample A Male 6.9
Sample B Male 3.9
Sample C Female 4.7
Sample D Female 4.2
Ventral forebrain
nTPM: 7.5
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.8
Sample A Male 7.8
Sample B Male 6.8
Sample C Female 7.3
Sample D Female 8.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
68845711 Antisense, RP_050224_02_D03, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 0.9
68845711 Antisense, RP_050224_02_D03, Mouse strain C57BL/6J (56 days, male) 0.9

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