MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.3 nTPM
HPA:46.3 nTPM
GTEx:56.4 nTPM
FANTOM5:65.8 Scaled Tags Per Million
Pig:55.7 nTPM
Mouse:135.1 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.7
1870 Female, age 42, unknown 45.4
2411 Female, age 72, unknown 45.1
1827 Male, age 72, unknown 45.0
2019 Male, age 18, unknown 44.4
1833 Male, age 53, unknown 44.1
2219 Male, age 76, both hemispheres 42.9
2666 Male, age 74, left hemisphere 42.7
2586 Male, age 75, left hemisphere 42.6
2828 Female, age 72, unknown 42.5
1830 Male, age 51, unknown 42.4
Dorsal raphe nucleus
nTPM: 45.5
2298 Female, age 72, unknown 48.9
2047 Male, age 72, unknown 45.3
2750 Male, age 76, both hemispheres 44.9
1828 Male, age 53, unknown 44.5
2016 Female, age 72, unknown 43.8
Inferior colliculus
nTPM: 44.2
2097 Female, age 72, unknown 46.2
1848 Female, age 42, unknown 44.3
1890 Male, age 53, unknown 44.1
2849 Male, age 72, unknown 42.1
Median raphe nucleus
nTPM: 45.6
2220 Male, age 76, midline 45.6
Pedunculopontine tegmental nucleus
nTPM: 46.1
2338 Male, age 61, both hemispheres 47.1
1921 Female, age 85, both hemispheres 45.7
2334 Male, age 80, both hemispheres 45.5
Periaquaductal grey, anterior
nTPM: 46.2
1947 Male, age 18, unknown 47.2
2502 Female, age 75, unknown 47.1
1795 Male, age 51, unknown 44.3
Periaquaductal grey, dorsal
nTPM: 43.9
2850 Male, age 76, both hemispheres 44.3
1840 Male, age 53, unknown 44.1
1831 Male, age 72, unknown 43.8
2464 Female, age 72, unknown 43.5
Periaquaductal grey, lateral
nTPM: 44.3
2053 Male, age 18, unknown 45.1
2272 Male, age 74, both hemispheres 44.3
2140 Male, age 76, both hemispheres 43.4
Pretectal area
nTPM: 45.3
1944 Female, age 72, unknown 47.9
1816 Male, age 51, unknown 46.7
2273 Male, age 74, both hemispheres 46.7
1815 Male, age 53, unknown 45.6
1817 Female, age 42, unknown 45.5
2007 Male, age 72, unknown 45.5
2224 Female, age 72, unknown 45.5
2667 Female, age 75, unknown 44.8
2825 Male, age 18, unknown 44.1
2316 Male, age 76, right hemisphere 43.4
2407 Male, age 75, both hemispheres 42.3
Red nucleus
nTPM: 43.8
1821 Female, age 72, unknown 48.1
2503 Female, age 72, unknown 44.5
1865 Male, age 51, unknown 44.4
1954 Female, age 42, unknown 44.3
1904 Male, age 53, unknown 44.0
2725 Female, age 75, unknown 43.6
2823 Male, age 76, right hemisphere 43.3
2588 Male, age 74, left hemisphere 43.2
2785 Male, age 18, unknown 43.2
2227 Male, age 72, unknown 42.9
2769 Male, age 72, unknown 42.3
2584 Male, age 75, left hemisphere 41.8
Substantia nigra
nTPM: 46.3
2241 Male, age 72, unknown 52.7
1916 Female, age 42, unknown 48.3
1851 Male, age 51, unknown 47.6
1941 Male, age 53, unknown 47.4
1889 Female, age 72, unknown 47.3
2665 Male, age 74, both hemispheres 45.7
2699 Male, age 18, unknown 44.5
2590 Female, age 75, unknown 44.1
2583 Male, age 75, right hemisphere 43.2
2409 Female, age 72, unknown 42.6
Superior colliculus
nTPM: 44.2
2668 Female, age 75, unknown 45.9
1895 Male, age 76, right hemisphere 44.8
2261 Male, age 18, unknown 44.8
2587 Male, age 74, left hemisphere 44.7
2087 Female, age 72, unknown 44.6
1839 Male, age 51, unknown 44.3
1796 Male, age 53, unknown 44.0
1913 Female, age 42, unknown 44.0
1995 Male, age 72, unknown 42.8
2664 Male, age 75, both hemispheres 42.6
Ventral tegmental area
nTPM: 45.3
1915 Female, age 42, unknown 47.0
2410 Female, age 72, unknown 46.2
2218 Male, age 76, both hemispheres 45.4
1942 Male, age 51, unknown 45.0
2223 Female, age 72, unknown 44.6
2021 Male, age 53, unknown 43.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.4
Samples: 139

Max nTPM: 86.7
Min nTPM: 34.5
Std nTPM: 9.7
Median nTPM: 56.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 86.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 83.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 81.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 80.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 75.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 73.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 73.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 71.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 71.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 71.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.8
FF:10158-103A5 76 years, female 65.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.7
Pig sample Sample description nTPM
Midbrain
nTPM: 54.3
Samples: 4

Max nTPM: 58.8
Min nTPM: 50.8
Sample A Female 58.8
Sample B Female 50.8
Sample C Male 54.5
Sample D Male 53.1
Periaqueductal gray
nTPM: 46.2
Samples: 3

Max nTPM: 50.8
Min nTPM: 41.1
Sample B Female 41.1
Sample C Male 50.8
Sample D Male 46.8
Substantia nigra
nTPM: 53.4
Samples: 4

Max nTPM: 65.3
Min nTPM: 44.1
Sample A Female 65.3
Sample B Female 50.1
Sample C Male 53.9
Sample D Male 44.1
Superior colliculi
nTPM: 55.7
Samples: 4

Max nTPM: 60.8
Min nTPM: 51.5
Sample A Female 58.3
Sample B Female 51.5
Sample C Male 60.8
Sample D Male 52.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 135.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 135.1
Samples: 4

Max nTPM: 140.8
Min nTPM: 130.4
Sample A Male 140.8
Sample B Male 131.7
Sample C Female 137.6
Sample D Female 130.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
76097708 Antisense, RP_060626_01_C04, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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