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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:239.4 nTPM
HPA:239.4 nTPM
GTEx:257.1 nTPM
FANTOM5:201.3 Scaled Tags Per Million
Pig:28.7 nTPM
Mouse:113.1 nTPM
Allen mouse:2.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 239.4
Sample id Sample description nTPM
Amygdala
nTPM: 239.4
2695 Female, age 67, right hemisphere 260.7
1987 Female, age 91, left hemisphere 246.6
2814 Male, age 76, right hemisphere 238.2
2514 Male, age 75, right hemisphere 229.0
2517 Female, age 94, left hemisphere 222.2
Basal amygdala
nTPM: 217.9
2609 Male, age 75, right hemisphere 241.5
2110 Male, age 80, left hemisphere 222.7
1955 Male, age 76, both hemispheres 221.5
2243 Female, age 91, right hemisphere 209.3
2685 Female, age 94, left hemisphere 207.4
2827 Female, age 67, right hemisphere 205.1
Central amygdala
nTPM: 228.8
2515 Male, age 75, right hemisphere 248.8
2826 Female, age 94, left hemisphere 235.8
1905 Male, age 76, both hemispheres 233.7
2239 Male, age 80, left hemisphere 214.4
2701 Female, age 91, right hemisphere 211.2
Corticomedial amygdala
nTPM: 214.5
2428 Male, age 75, right hemisphere 233.7
2829 Male, age 80, left hemisphere 218.5
2242 Female, age 91, right hemisphere 215.1
2240 Male, age 76, both hemispheres 213.0
2429 Female, age 94, left hemisphere 206.2
2535 Female, age 67, right hemisphere 200.5
Lateral amygdala
nTPM: 224.9
2516 Male, age 75, right hemisphere 244.4
2256 Male, age 80, left hemisphere 233.5
1883 Male, age 76, both hemispheres 230.3
2534 Female, age 94, left hemisphere 217.4
2830 Female, age 67, right hemisphere 216.5
2255 Female, age 91, right hemisphere 207.3
Stria terminalis, bed nucleus
nTPM: 206.1
2201 Male, age 74, unknown 214.5
1974 Female, age 91, both hemispheres 204.5
2486 Female, age 94, both hemispheres 199.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 257.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 257.1
Samples: 152

Max nTPM: 661.8
Min nTPM: 56.4
Std nTPM: 88.8
Median nTPM: 243.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 661.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 537.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 513.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 494.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 490.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 477.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 473.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 421.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 412.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 404.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 402.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 401.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 373.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 372.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 371.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 360.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 357.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 355.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 344.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 343.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 342.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 334.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 329.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 322.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 321.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 320.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 315.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 314.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 312.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 310.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 308.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 307.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 301.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 300.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 300.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 300.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 298.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 297.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 292.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 291.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 290.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 289.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 289.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 288.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 286.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 282.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 277.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 275.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 274.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 272.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 272.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 271.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 270.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 269.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 269.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 268.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 267.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 267.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 267.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 263.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 262.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 261.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 260.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 260.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 258.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 257.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 257.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 256.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 255.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 249.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 247.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 247.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 247.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 245.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 245.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 243.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 243.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 242.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 242.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 242.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 241.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 240.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 239.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 238.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 235.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 233.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 229.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 228.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 226.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 225.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 225.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 224.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 224.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 224.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 223.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 222.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 221.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 220.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 219.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 219.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 215.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 215.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 215.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 214.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 211.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 210.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 209.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 208.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 208.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 204.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 204.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 204.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 202.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 202.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 201.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 200.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 199.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 193.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 192.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 191.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 191.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 189.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 187.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 186.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 186.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 186.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 185.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 180.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 179.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 179.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 175.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 174.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 171.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 170.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 168.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 167.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 166.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 162.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 161.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 160.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 157.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 156.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 150.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 145.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 142.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 141.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 131.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 127.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 127.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 110.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 94.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 56.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 201.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 201.3
FF:10151-102I7 76 years, female 201.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 28.7
Pig sample Sample description nTPM
Amygdala
nTPM: 28.7
Samples: 4

Max nTPM: 33.7
Min nTPM: 23.5
Sample A Female 33.7
Sample B Female 30.3
Sample C Male 27.4
Sample D Male 23.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 113.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 113.1
Samples: 4

Max nTPM: 148.7
Min nTPM: 94.4
Sample A Male 100.9
Sample B Male 108.5
Sample C Female 148.7
Sample D Female 94.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.3
633273 Antisense, RP_040907_02_C08, Mouse strain C57BL/6J (56 days, male) 2.3

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