MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:256.0 nTPM
HPA:256.0 nTPM
GTEx:360.3 nTPM
FANTOM5:295.5 Scaled Tags Per Million
Pig:55.2 nTPM
Mouse:170.3 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 256.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 248.3
2586 Male, age 75, left hemisphere 302.8
1870 Female, age 42, unknown 258.9
2828 Female, age 72, unknown 254.2
2019 Male, age 18, unknown 247.6
1833 Male, age 53, unknown 244.0
1830 Male, age 51, unknown 242.1
2666 Male, age 74, left hemisphere 241.5
2411 Female, age 72, unknown 236.7
1827 Male, age 72, unknown 231.4
2219 Male, age 76, both hemispheres 223.4
Dorsal raphe nucleus
nTPM: 256.0
2016 Female, age 72, unknown 276.8
1828 Male, age 53, unknown 261.6
2047 Male, age 72, unknown 255.2
2298 Female, age 72, unknown 247.8
2750 Male, age 76, both hemispheres 238.8
Inferior colliculus
nTPM: 249.6
2097 Female, age 72, unknown 256.3
1890 Male, age 53, unknown 253.0
1848 Female, age 42, unknown 251.8
2849 Male, age 72, unknown 237.3
Median raphe nucleus
nTPM: 233.3
2220 Male, age 76, midline 233.3
Pedunculopontine tegmental nucleus
nTPM: 232.8
2334 Male, age 80, both hemispheres 242.8
1921 Female, age 85, both hemispheres 228.8
2338 Male, age 61, both hemispheres 226.8
Periaquaductal grey, anterior
nTPM: 245.4
2502 Female, age 75, unknown 255.0
1947 Male, age 18, unknown 246.5
1795 Male, age 51, unknown 234.7
Periaquaductal grey, dorsal
nTPM: 249.5
2850 Male, age 76, both hemispheres 256.3
1831 Male, age 72, unknown 253.4
1840 Male, age 53, unknown 245.4
2464 Female, age 72, unknown 243.1
Periaquaductal grey, lateral
nTPM: 245.7
2053 Male, age 18, unknown 256.9
2140 Male, age 76, both hemispheres 249.4
2272 Male, age 74, both hemispheres 230.8
Pretectal area
nTPM: 241.6
2273 Male, age 74, both hemispheres 249.9
2407 Male, age 75, both hemispheres 249.8
1815 Male, age 53, unknown 248.0
1817 Female, age 42, unknown 245.1
1944 Female, age 72, unknown 241.6
2316 Male, age 76, right hemisphere 240.6
2667 Female, age 75, unknown 239.8
2224 Female, age 72, unknown 239.5
2825 Male, age 18, unknown 236.1
1816 Male, age 51, unknown 233.8
2007 Male, age 72, unknown 233.3
Red nucleus
nTPM: 253.4
2769 Male, age 72, unknown 265.6
2227 Male, age 72, unknown 265.5
2503 Female, age 72, unknown 263.6
1821 Female, age 72, unknown 262.4
1954 Female, age 42, unknown 261.9
1865 Male, age 51, unknown 261.0
1904 Male, age 53, unknown 255.9
2584 Male, age 75, left hemisphere 248.6
2785 Male, age 18, unknown 247.8
2725 Female, age 75, unknown 240.0
2823 Male, age 76, right hemisphere 238.4
2588 Male, age 74, left hemisphere 230.5
Substantia nigra
nTPM: 245.6
2699 Male, age 18, unknown 268.7
2583 Male, age 75, right hemisphere 266.3
1851 Male, age 51, unknown 254.0
1916 Female, age 42, unknown 242.9
1889 Female, age 72, unknown 242.5
1941 Male, age 53, unknown 241.0
2590 Female, age 75, unknown 240.9
2409 Female, age 72, unknown 236.5
2241 Male, age 72, unknown 232.2
2665 Male, age 74, both hemispheres 231.1
Superior colliculus
nTPM: 249.0
1995 Male, age 72, unknown 278.5
2664 Male, age 75, both hemispheres 269.1
1913 Female, age 42, unknown 260.0
2668 Female, age 75, unknown 256.5
2587 Male, age 74, left hemisphere 248.4
1839 Male, age 51, unknown 247.6
2087 Female, age 72, unknown 241.0
1796 Male, age 53, unknown 233.6
1895 Male, age 76, right hemisphere 230.0
2261 Male, age 18, unknown 225.4
Ventral tegmental area
nTPM: 249.5
1942 Male, age 51, unknown 256.5
2021 Male, age 53, unknown 255.0
1915 Female, age 42, unknown 253.0
2223 Female, age 72, unknown 250.5
2410 Female, age 72, unknown 247.8
2218 Male, age 76, both hemispheres 234.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 360.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 360.3
Samples: 139

Max nTPM: 756.6
Min nTPM: 153.0
Std nTPM: 112.6
Median nTPM: 333.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 756.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 726.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 659.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 643.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 629.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 605.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 565.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 557.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 556.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 541.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 537.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 295.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 295.5
FF:10158-103A5 76 years, female 295.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.2
Pig sample Sample description nTPM
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 100.7
Min nTPM: 33.8
Sample A Female 100.7
Sample B Female 46.4
Sample C Male 40.0
Sample D Male 33.8
Periaqueductal gray
nTPM: 41.7
Samples: 3

Max nTPM: 44.3
Min nTPM: 38.2
Sample B Female 42.7
Sample C Male 44.3
Sample D Male 38.2
Substantia nigra
nTPM: 50.6
Samples: 4

Max nTPM: 63.5
Min nTPM: 44.9
Sample A Female 63.5
Sample B Female 44.9
Sample C Male 45.7
Sample D Male 48.4
Superior colliculi
nTPM: 47.8
Samples: 4

Max nTPM: 61.3
Min nTPM: 35.5
Sample A Female 61.3
Sample B Female 35.5
Sample C Male 50.7
Sample D Male 43.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 170.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 170.3
Samples: 4

Max nTPM: 178.8
Min nTPM: 158.6
Sample A Male 178.8
Sample B Male 167.4
Sample C Female 158.6
Sample D Female 176.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
633273 Antisense, RP_040907_02_C08, Mouse strain C57BL/6J (56 days, male) 1.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.