BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:14.8 nTPM
HPA:14.8 nTPM
GTEx:17.8 nTPM
FANTOM5:5.8 Scaled Tags Per Million
Pig:0.3 nTPM
Mouse:0.3 nTPM

CAUDATE - Antibody stainingi
Antibody HPA041740
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.3
2846 Female, age 79, unknown 14.9
2288 Male, age 75, left hemisphere 14.8
2290 Female, age 72, unknown 14.4
2481 Female, age 94, left hemisphere 14.4
1854 Male, age 80, left hemisphere 14.3
2289 Male, age 61, right hemisphere 14.1
1781 Male, age 74, unknown 13.8
1857 Female, age 85, left hemisphere 13.8
Claustrum
nTPM: 13.9
2292 Female, age 85, both hemispheres 14.1
2645 Female, age 72, unknown 14.1
1956 Male, age 74, unknown 14.0
2198 Male, age 80, both hemispheres 14.0
2392 Female, age 94, both hemispheres 14.0
2568 Male, age 61, both hemispheres 14.0
2491 Male, age 75, both hemispheres 13.9
2196 Female, age 79, unknown 13.7
2284 Female, age 91, both hemispheres 13.7
Globus pallidus, externus
nTPM: 14.2
1996 Male, age 80, right hemisphere 14.3
2567 Female, age 72, unknown 14.3
2772 Female, age 79, unknown 14.3
2646 Male, age 61, right hemisphere 14.1
2395 Male, age 75, both hemispheres 14.0
Globus pallidus, internus
nTPM: 14.5
1818 Male, age 74, unknown 15.3
2037 Male, age 80, right hemisphere 14.7
2483 Female, age 94, right hemisphere 14.7
2778 Female, age 91, both hemispheres 14.5
2287 Male, age 75, right hemisphere 14.3
2111 Female, age 85, right hemisphere 14.2
2566 Female, age 72, unknown 13.8
Nucleus accumbens
nTPM: 14.0
1856 Female, age 91, right hemisphere 14.1
2286 Male, age 75, left hemisphere 14.1
2391 Female, age 94, left hemisphere 14.1
1783 Male, age 74, unknown 14.0
1806 Female, age 85, left hemisphere 13.9
2698 Female, age 72, unknown 13.9
2824 Male, age 61, right hemisphere 13.9
2732 Male, age 80, right hemisphere 13.7
Nucleus basalis of Meynert
nTPM: 14.8
2484 Female, age 94, left hemisphere 15.3
2821 Male, age 75, both hemispheres 15.0
2393 Male, age 80, right hemisphere 14.4
2569 Male, age 61, both hemispheres 14.4
Nucleus of the diagonal band
nTPM: 13.9
1812 Female, age 91, both hemispheres 14.4
2029 Male, age 61, right hemisphere 14.1
2775 Male, age 80, right hemisphere 13.9
1979 Male, age 74, unknown 13.6
2195 Female, age 85, both hemispheres 13.5
Olfactory tubercle
nTPM: 13.9
1846 Male, age 80, right hemisphere 14.3
2856 Male, age 75, right hemisphere 14.3
1998 Female, age 91, both hemispheres 14.0
2487 Female, age 94, left hemisphere 13.2
Putamen
nTPM: 14.4
2466 Female, age 79, unknown 14.6
2482 Female, age 94, left hemisphere 14.6
2647 Male, age 75, left hemisphere 14.6
1838 Male, age 80, right hemisphere 14.5
2489 Female, age 72, unknown 14.4
1937 Female, age 91, right hemisphere 14.3
1829 Male, age 74, unknown 14.0
Septal nuclei
nTPM: 13.8
2031 Female, age 72, unknown 14.2
2199 Male, age 80, right hemisphere 14.2
2394 Male, age 61, left hemisphere 14.2
2009 Female, age 91, both hemispheres 13.7
1960 Male, age 74, unknown 13.5
2059 Female, age 85, both hemispheres 13.4
2629 Female, age 94, right hemisphere 13.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.7
Samples: 246

Max nTPM: 53.2
Min nTPM: 1.0
Std nTPM: 11.1
Median nTPM: 9.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 53.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 53.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 52.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 51.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 50.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 46.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 45.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 44.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 43.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 40.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 39.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.1
Samples: 246

Max nTPM: 92.3
Min nTPM: 0.5
Std nTPM: 10.3
Median nTPM: 7.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 92.3
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 51.6
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 48.0
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 47.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 44.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 39.5
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 33.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 31.8
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 31.7
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 31.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 30.8
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Brain - Putamen (basal ganglia)
Average nTPM: 17.8
Samples: 205

Max nTPM: 102.4
Min nTPM: 1.2
Std nTPM: 15.9
Median nTPM: 14.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 102.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 94.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 75.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 71.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 55.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 54.1
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 53.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 53.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 53.1
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 46.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 44.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.8
FF:10164-103B2 76 years, female 1.8
Globus pallidus
Scaled Tags Per Million: 2.9
FF:10161-103A8 76 years, female 4.3
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 5.8
FF:10037-101F1 23-56 years, mixed 5.8
Putamen
Scaled Tags Per Million: 1.2
FF:10176-103C5 60 years, female 1.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.3
Pig sample Sample description nTPM
Caudate
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 0.3
Putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.3
Sample B Female 0.2
Sample C Male 0.4
Sample D Male 0.1
Septum
nTPM: 0.4
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.8
Sample D Male 0.2
Ventral pallidum
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.1
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.0
Sample C Female 0.1
Sample D Female 0.8

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