MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:155.3 nTPM
HPA:155.3 nTPM
GTEx:167.3 nTPM
FANTOM5:95.0 Scaled Tags Per Million
Pig:26.3 nTPM
Mouse:15.8 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 155.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 151.8
2411 Female, age 72, unknown 159.4
1870 Female, age 42, unknown 157.8
2019 Male, age 18, unknown 154.3
1833 Male, age 53, unknown 152.6
1827 Male, age 72, unknown 152.5
2586 Male, age 75, left hemisphere 150.4
1830 Male, age 51, unknown 150.0
2828 Female, age 72, unknown 148.1
2666 Male, age 74, left hemisphere 147.3
2219 Male, age 76, both hemispheres 146.1
Dorsal raphe nucleus
nTPM: 153.8
1828 Male, age 53, unknown 156.7
2750 Male, age 76, both hemispheres 156.0
2298 Female, age 72, unknown 153.5
2047 Male, age 72, unknown 151.7
2016 Female, age 72, unknown 151.2
Inferior colliculus
nTPM: 150.9
1890 Male, age 53, unknown 152.3
2097 Female, age 72, unknown 151.3
1848 Female, age 42, unknown 150.0
2849 Male, age 72, unknown 149.9
Median raphe nucleus
nTPM: 152.6
2220 Male, age 76, midline 152.6
Pedunculopontine tegmental nucleus
nTPM: 154.7
2334 Male, age 80, both hemispheres 155.3
2338 Male, age 61, both hemispheres 154.8
1921 Female, age 85, both hemispheres 154.1
Periaquaductal grey, anterior
nTPM: 147.3
1947 Male, age 18, unknown 149.2
1795 Male, age 51, unknown 147.6
2502 Female, age 75, unknown 145.3
Periaquaductal grey, dorsal
nTPM: 149.3
1840 Male, age 53, unknown 150.9
2464 Female, age 72, unknown 149.1
2850 Male, age 76, both hemispheres 148.8
1831 Male, age 72, unknown 148.3
Periaquaductal grey, lateral
nTPM: 146.6
2053 Male, age 18, unknown 148.9
2140 Male, age 76, both hemispheres 146.4
2272 Male, age 74, both hemispheres 144.6
Pretectal area
nTPM: 150.6
1817 Female, age 42, unknown 156.0
2007 Male, age 72, unknown 154.4
1815 Male, age 53, unknown 153.1
1816 Male, age 51, unknown 152.1
2667 Female, age 75, unknown 151.8
2825 Male, age 18, unknown 150.7
1944 Female, age 72, unknown 150.1
2224 Female, age 72, unknown 148.3
2273 Male, age 74, both hemispheres 147.9
2407 Male, age 75, both hemispheres 146.2
2316 Male, age 76, right hemisphere 146.1
Red nucleus
nTPM: 154.5
1821 Female, age 72, unknown 166.8
1954 Female, age 42, unknown 156.3
1865 Male, age 51, unknown 155.8
2503 Female, age 72, unknown 155.3
2725 Female, age 75, unknown 154.9
1904 Male, age 53, unknown 153.9
2227 Male, age 72, unknown 153.9
2588 Male, age 74, left hemisphere 153.8
2823 Male, age 76, right hemisphere 152.9
2769 Male, age 72, unknown 151.9
2785 Male, age 18, unknown 150.4
2584 Male, age 75, left hemisphere 148.4
Substantia nigra
nTPM: 155.3
1916 Female, age 42, unknown 160.7
1851 Male, age 51, unknown 159.3
2241 Male, age 72, unknown 158.7
2409 Female, age 72, unknown 158.4
1889 Female, age 72, unknown 155.7
2665 Male, age 74, both hemispheres 154.7
2699 Male, age 18, unknown 152.8
1941 Male, age 53, unknown 152.3
2590 Female, age 75, unknown 151.4
2583 Male, age 75, right hemisphere 149.3
Superior colliculus
nTPM: 151.4
1895 Male, age 76, right hemisphere 156.2
2668 Female, age 75, unknown 155.5
2587 Male, age 74, left hemisphere 154.3
1913 Female, age 42, unknown 152.1
1839 Male, age 51, unknown 150.2
1995 Male, age 72, unknown 150.1
2087 Female, age 72, unknown 150.1
2261 Male, age 18, unknown 149.4
1796 Male, age 53, unknown 149.0
2664 Male, age 75, both hemispheres 147.1
Ventral tegmental area
nTPM: 152.7
2410 Female, age 72, unknown 156.7
1915 Female, age 42, unknown 156.6
2223 Female, age 72, unknown 154.8
2218 Male, age 76, both hemispheres 151.4
1942 Male, age 51, unknown 148.5
2021 Male, age 53, unknown 148.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 167.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 167.3
Samples: 139

Max nTPM: 376.2
Min nTPM: 100.4
Std nTPM: 40.8
Median nTPM: 158.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 376.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 318.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 305.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 268.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 251.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 246.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 244.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 243.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 241.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 238.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 233.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.0
FF:10158-103A5 76 years, female 95.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.3
Pig sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 27.2
Min nTPM: 18.7
Sample A Female 24.5
Sample B Female 18.7
Sample C Male 27.2
Sample D Male 24.9
Periaqueductal gray
nTPM: 19.8
Samples: 3

Max nTPM: 21.3
Min nTPM: 18.4
Sample B Female 19.6
Sample C Male 21.3
Sample D Male 18.4
Substantia nigra
nTPM: 22.2
Samples: 4

Max nTPM: 30.4
Min nTPM: 16.6
Sample A Female 30.4
Sample B Female 16.6
Sample C Male 24.8
Sample D Male 17.1
Superior colliculi
nTPM: 26.3
Samples: 4

Max nTPM: 33.5
Min nTPM: 16.3
Sample A Female 33.5
Sample B Female 16.3
Sample C Male 31.9
Sample D Male 23.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 16.2
Min nTPM: 15.1
Sample A Male 15.1
Sample B Male 15.6
Sample C Female 16.2
Sample D Female 16.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
68410452 Antisense, RP_041214_01_H10, Mouse strain C57BL/6J (56 days, male) 3.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.