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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:426.5 nTPM
GTEx:426.5 nTPM
FANTOM5:94.5 Scaled Tags Per Million
Pig:244.7 nTPM
Mouse:277.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 426.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 426.5
Samples: 105

Max nTPM: 1598.3
Min nTPM: 64.9
Std nTPM: 226.7
Median nTPM:
218_1 71 years, female 1598.3
447_1 81 years, male 1212.1
347_1 72 years, male 979.0
350_1 84 years, female 819.2
386_1 76 years, male 781.1
6_1 73 years, female 770.3
384_1 83 years, male 746.9
379_1 60 years, male 691.7
322_1 76 years, male 678.8
41_1 94 years, female 675.5
173_1 67 years, male 674.2
319_1 81 years, male 671.2
237_1 82 years, male 669.2
293_1 68 years, female 663.4
317_1 60 years, male 653.2
321_1 62 years, female 641.2
375_1 74 years, female 634.5
307_1 66 years, female 600.1
163_1 78 years, male 592.0
351_1 91 years, male 591.3
145_1 84 years, male 583.0
349_1 83 years, male 573.3
316_1 62 years, male 570.2
177_1 74 years, male 537.2
243_1 75 years, male 530.7
348_1 84 years, male 527.0
4_1 88 years, female 525.1
353_1 82 years, female 513.6
352_1 62 years, male 505.0
42_1 85 years, male 497.3
389_1 86 years, female 495.5
2_1 77 years, female 485.7
320_1 89 years, female 485.3
35_1 74 years, female 482.0
311_1 78 years, male 475.4
354_1 81 years, female 474.5
291_1 76 years, male 473.7
376_1 75 years, female 470.5
452_1 88 years, female 456.0
172_1 72 years, female 454.6
377_1 82 years, female 453.7
356_1 87 years, female 449.1
318_1 68 years, male 439.3
406_1 79 years, male 436.6
99_1 64 years, male 436.4
292_1 71 years, male 434.0
506_1 65 years, male 429.3
189_1 76 years, male 419.9
480_1 63 years, male 405.9
251_1 78 years, male 405.2
264_1 73 years, female 402.1
517_1 88 years, male 400.1
117_1 61 years, male 391.6
313_1 79 years, female 388.5
115_1 83 years, male 387.9
335_1 73 years, female 384.8
295_1 61 years, female 375.0
503_1 68 years, male 372.5
425_1 59 years, female 370.3
396_1 62 years, male 363.6
394_1 75 years, female 355.7
119_1 70 years, female 351.5
324_1 76 years, male 351.4
526_1 61 years, male 351.4
495_1 57 years, female 350.3
405_1 91 years, male 345.5
17_1 71 years, male 342.7
153_1 70 years, female 337.9
139_1 64 years, female 336.7
18_1 88 years, male 335.4
355_1 70 years, female 332.9
314_1 67 years, male 330.7
468_1 89 years, male 323.7
246_1 77 years, male 323.1
137_1 83 years, male 321.6
286_1 68 years, female 307.2
120_1 70 years, female 302.9
9_1 66 years, female 302.5
254_1 77 years, female 301.2
404_1 82 years, female 294.3
499_1 55 years, female 291.1
126_1 63 years, male 287.4
265_1 87 years, male 274.0
518_1 75 years, female 273.1
308_1 70 years, female 270.9
229_1 69 years, female 228.4
315_1 62 years, female 211.0
89_1 63 years, male 200.1
288_1 66 years, female 199.6
217_1 76 years, male 193.8
81_1 67 years, male 192.4
109_1 81 years, female 191.7
43_1 64 years, female 191.1
266_1 85 years, male 187.2
142_1 61 years, female 177.4
490_1 67 years, female 176.5
162_1 79 years, female 134.3
32_1 67 years, male 133.0
501_1 88 years, male 130.9
415_1 77 years, female 130.7
466_1 57 years, female 126.4
149_1 88 years, male 106.9
491_1 89 years, female 106.6
414_1 84 years, female 102.2
413_1 59 years, female 64.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 94.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 94.5
FF:10030-101E3 24-65 years, mixed 94.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 244.7
Pig sample Sample description nTPM
Retina
nTPM: 244.8
Samples: 4

Max nTPM: 276.2
Min nTPM: 217.3
Sample A Female 254.8
Sample B Female 217.3
Sample C Male 276.2
Sample D Male 230.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 277.3
Mouse sample Sample description nTPM
Retina
nTPM: 277.3
Samples: 4

Max nTPM: 327.6
Min nTPM: 232.1
Sample A Male 327.6
Sample B Male 277.8
Sample C Female 271.8
Sample D Female 232.1

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by the Knut & Alice Wallenberg Foundation.