BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:49.1 nTPM
HPA:49.1 nTPM
GTEx:48.8 nTPM
FANTOM5:90.4 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:30.8 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA067643
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 49.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.5
2481 Female, age 94, left hemisphere 51.8
1857 Female, age 85, left hemisphere 49.4
2289 Male, age 61, right hemisphere 45.9
2290 Female, age 72, unknown 45.4
1854 Male, age 80, left hemisphere 44.7
1781 Male, age 74, unknown 43.7
2288 Male, age 75, left hemisphere 43.4
2846 Female, age 79, unknown 40.1
Claustrum
nTPM: 40.1
2491 Male, age 75, both hemispheres 43.4
2196 Female, age 79, unknown 42.5
2198 Male, age 80, both hemispheres 41.3
2284 Female, age 91, both hemispheres 40.1
2645 Female, age 72, unknown 40.0
1956 Male, age 74, unknown 39.0
2568 Male, age 61, both hemispheres 38.8
2292 Female, age 85, both hemispheres 37.9
2392 Female, age 94, both hemispheres 37.8
Globus pallidus, externus
nTPM: 46.7
2646 Male, age 61, right hemisphere 50.5
1996 Male, age 80, right hemisphere 50.1
2772 Female, age 79, unknown 48.7
2567 Female, age 72, unknown 44.2
2395 Male, age 75, both hemispheres 40.2
Globus pallidus, internus
nTPM: 46.1
2483 Female, age 94, right hemisphere 59.1
2037 Male, age 80, right hemisphere 48.3
1818 Male, age 74, unknown 47.7
2778 Female, age 91, both hemispheres 44.3
2566 Female, age 72, unknown 42.4
2287 Male, age 75, right hemisphere 42.3
2111 Female, age 85, right hemisphere 38.5
Nucleus accumbens
nTPM: 44.5
2286 Male, age 75, left hemisphere 46.7
1806 Female, age 85, left hemisphere 46.3
2732 Male, age 80, right hemisphere 45.8
2824 Male, age 61, right hemisphere 44.7
1856 Female, age 91, right hemisphere 44.1
2698 Female, age 72, unknown 43.4
1783 Male, age 74, unknown 42.9
2391 Female, age 94, left hemisphere 42.2
Nucleus basalis of Meynert
nTPM: 46.5
2569 Male, age 61, both hemispheres 57.9
2393 Male, age 80, right hemisphere 44.7
2484 Female, age 94, left hemisphere 44.4
2821 Male, age 75, both hemispheres 39.0
Nucleus of the diagonal band
nTPM: 48.3
1979 Male, age 74, unknown 53.7
2775 Male, age 80, right hemisphere 49.7
2195 Female, age 85, both hemispheres 49.5
1812 Female, age 91, both hemispheres 47.1
2029 Male, age 61, right hemisphere 41.2
Olfactory tubercle
nTPM: 44.8
1846 Male, age 80, right hemisphere 46.0
1998 Female, age 91, both hemispheres 44.8
2856 Male, age 75, right hemisphere 44.8
2487 Female, age 94, left hemisphere 43.6
Putamen
nTPM: 43.2
2482 Female, age 94, left hemisphere 47.8
2647 Male, age 75, left hemisphere 44.6
1838 Male, age 80, right hemisphere 43.5
1937 Female, age 91, right hemisphere 43.5
2489 Female, age 72, unknown 41.7
2466 Female, age 79, unknown 41.1
1829 Male, age 74, unknown 39.9
Septal nuclei
nTPM: 49.1
2059 Female, age 85, both hemispheres 57.1
1960 Male, age 74, unknown 52.8
2199 Male, age 80, right hemisphere 49.2
2031 Female, age 72, unknown 48.6
2009 Female, age 91, both hemispheres 47.6
2394 Male, age 61, left hemisphere 45.5
2629 Female, age 94, right hemisphere 42.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.3
Samples: 246

Max nTPM: 123.3
Min nTPM: 8.5
Std nTPM: 14.7
Median nTPM: 37.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 123.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 99.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 87.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 79.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 79.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 74.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 74.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 73.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 70.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 69.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 67.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.8
Samples: 246

Max nTPM: 160.3
Min nTPM: 20.9
Std nTPM: 20.8
Median nTPM: 42.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 160.3
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 126.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 113.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 112.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 111.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 109.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 105.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 104.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 104.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 103.2
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 102.1
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Brain - Putamen (basal ganglia)
Average nTPM: 42.9
Samples: 205

Max nTPM: 101.0
Min nTPM: 11.8
Std nTPM: 16.1
Median nTPM: 39.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 101.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 98.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 90.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 88.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 88.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 87.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 83.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 76.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 75.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 72.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 71.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 90.4
FF:10164-103B2 76 years, female 90.4
Globus pallidus
Scaled Tags Per Million: 74.8
FF:10175-103C4 60 years, female 85.2
FF:10161-103A8 76 years, female 64.5
Nucleus accumbens
Scaled Tags Per Million: 59.6
FF:10037-101F1 23-56 years, mixed 59.6
Putamen
Scaled Tags Per Million: 81.8
FF:10176-103C5 60 years, female 81.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.4
Pig sample Sample description nTPM
Caudate
nTPM: 13.7
Samples: 4

Max nTPM: 14.5
Min nTPM: 13.0
Sample A Female 13.3
Sample B Female 14.0
Sample C Male 14.5
Sample D Male 13.0
Putamen
nTPM: 15.9
Samples: 4

Max nTPM: 19.8
Min nTPM: 12.9
Sample A Female 16.2
Sample B Female 14.7
Sample C Male 19.8
Sample D Male 12.9
Septum
nTPM: 18.4
Samples: 4

Max nTPM: 19.4
Min nTPM: 17.4
Sample A Female 17.4
Sample B Female 19.4
Sample C Male 17.4
Sample D Male 19.4
Ventral pallidum
nTPM: 16.3
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.6
Sample A Female 16.0
Sample B Female 18.3
Sample C Male 16.4
Sample D Male 14.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 30.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.6
Samples: 4

Max nTPM: 30.1
Min nTPM: 26.4
Sample A Male 27.1
Sample B Male 26.9
Sample C Female 30.1
Sample D Female 26.4
Septum
nTPM: 30.8
Samples: 4

Max nTPM: 33.1
Min nTPM: 25.3
Sample A Male 25.3
Sample B Male 33.0
Sample C Female 31.7
Sample D Female 33.1
Ventral forebrain
nTPM: 23.0
Samples: 4

Max nTPM: 26.5
Min nTPM: 19.6
Sample A Male 22.5
Sample B Male 23.4
Sample C Female 26.5
Sample D Female 19.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68666565 Antisense, RP_050126_02_E06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.3
68666565 Antisense, RP_050126_02_E06, Mouse strain C57BL/6J (56 days, male) 0.3

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