MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:70.6 nTPM
HPA:70.6 nTPM
GTEx:79.8 nTPM
FANTOM5:139.9 Scaled Tags Per Million
Pig:86.1 nTPM
Mouse:31.1 nTPM
Allen mouse:11.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.7
2586 Male, age 75, left hemisphere 105.2
2666 Male, age 74, left hemisphere 81.7
2828 Female, age 72, unknown 80.2
1827 Male, age 72, unknown 64.5
2219 Male, age 76, both hemispheres 64.0
1833 Male, age 53, unknown 60.0
1870 Female, age 42, unknown 52.8
1830 Male, age 51, unknown 51.7
2019 Male, age 18, unknown 34.2
2411 Female, age 72, unknown 32.5
Dorsal raphe nucleus
nTPM: 39.7
1828 Male, age 53, unknown 53.0
2016 Female, age 72, unknown 43.5
2047 Male, age 72, unknown 42.1
2750 Male, age 76, both hemispheres 31.4
2298 Female, age 72, unknown 28.5
Inferior colliculus
nTPM: 65.5
2849 Male, age 72, unknown 106.5
1848 Female, age 42, unknown 63.2
1890 Male, age 53, unknown 53.9
2097 Female, age 72, unknown 38.3
Median raphe nucleus
nTPM: 54.2
2220 Male, age 76, midline 54.2
Pedunculopontine tegmental nucleus
nTPM: 46.5
2334 Male, age 80, both hemispheres 51.4
2338 Male, age 61, both hemispheres 48.6
1921 Female, age 85, both hemispheres 39.5
Periaquaductal grey, anterior
nTPM: 65.4
1947 Male, age 18, unknown 70.1
1795 Male, age 51, unknown 66.1
2502 Female, age 75, unknown 59.8
Periaquaductal grey, dorsal
nTPM: 70.6
2850 Male, age 76, both hemispheres 106.4
1840 Male, age 53, unknown 63.8
1831 Male, age 72, unknown 57.9
2464 Female, age 72, unknown 54.4
Periaquaductal grey, lateral
nTPM: 61.8
2140 Male, age 76, both hemispheres 83.2
2053 Male, age 18, unknown 56.1
2272 Male, age 74, both hemispheres 46.1
Pretectal area
nTPM: 57.3
2407 Male, age 75, both hemispheres 75.3
2825 Male, age 18, unknown 73.3
1816 Male, age 51, unknown 64.8
1817 Female, age 42, unknown 63.0
1815 Male, age 53, unknown 58.5
2667 Female, age 75, unknown 58.1
1944 Female, age 72, unknown 53.1
2007 Male, age 72, unknown 49.4
2316 Male, age 76, right hemisphere 48.5
2224 Female, age 72, unknown 44.8
2273 Male, age 74, both hemispheres 41.3
Red nucleus
nTPM: 51.6
2584 Male, age 75, left hemisphere 62.8
2725 Female, age 75, unknown 60.8
2588 Male, age 74, left hemisphere 59.6
2769 Male, age 72, unknown 58.4
2227 Male, age 72, unknown 57.1
2823 Male, age 76, right hemisphere 54.3
2503 Female, age 72, unknown 48.5
1954 Female, age 42, unknown 48.4
1865 Male, age 51, unknown 45.9
2785 Male, age 18, unknown 43.4
1904 Male, age 53, unknown 41.2
1821 Female, age 72, unknown 38.6
Substantia nigra
nTPM: 45.6
2699 Male, age 18, unknown 71.2
2665 Male, age 74, both hemispheres 62.5
1916 Female, age 42, unknown 51.0
2583 Male, age 75, right hemisphere 50.9
1941 Male, age 53, unknown 44.9
1889 Female, age 72, unknown 44.1
1851 Male, age 51, unknown 43.5
2590 Female, age 75, unknown 40.0
2409 Female, age 72, unknown 23.8
2241 Male, age 72, unknown 23.7
Superior colliculus
nTPM: 60.5
2664 Male, age 75, both hemispheres 109.4
1796 Male, age 53, unknown 64.4
1839 Male, age 51, unknown 64.2
2668 Female, age 75, unknown 58.4
2261 Male, age 18, unknown 55.5
2587 Male, age 74, left hemisphere 51.5
1913 Female, age 42, unknown 51.4
2087 Female, age 72, unknown 50.7
1995 Male, age 72, unknown 50.1
1895 Male, age 76, right hemisphere 49.6
Ventral tegmental area
nTPM: 44.8
2223 Female, age 72, unknown 49.8
2218 Male, age 76, both hemispheres 47.6
1942 Male, age 51, unknown 46.5
2021 Male, age 53, unknown 46.0
1915 Female, age 42, unknown 45.6
2410 Female, age 72, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.8
Samples: 139

Max nTPM: 160.9
Min nTPM: 49.6
Std nTPM: 17.2
Median nTPM: 76.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 160.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 133.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 127.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 126.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 123.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 116.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 109.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 109.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 109.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 107.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 101.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.9
FF:10158-103A5 76 years, female 139.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 86.1
Pig sample Sample description nTPM
Midbrain
nTPM: 81.7
Samples: 4

Max nTPM: 106.4
Min nTPM: 62.6
Sample A Female 65.0
Sample B Female 62.6
Sample C Male 106.4
Sample D Male 92.6
Periaqueductal gray
nTPM: 68.4
Samples: 3

Max nTPM: 75.8
Min nTPM: 64.1
Sample B Female 64.1
Sample C Male 75.8
Sample D Male 65.3
Substantia nigra
nTPM: 63.9
Samples: 4

Max nTPM: 76.2
Min nTPM: 56.1
Sample A Female 63.9
Sample B Female 56.1
Sample C Male 76.2
Sample D Male 59.5
Superior colliculi
nTPM: 86.1
Samples: 4

Max nTPM: 108.6
Min nTPM: 55.6
Sample A Female 87.4
Sample B Female 55.6
Sample C Male 92.9
Sample D Male 108.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 34.9
Min nTPM: 28.2
Sample A Male 34.9
Sample B Male 28.2
Sample C Female 30.1
Sample D Female 31.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
68911027 Antisense, RP_050203_02_G07, Mouse strain C57BL/6J (56 days, male) 11.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.