MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:235.7 nTPM
HPA:235.7 nTPM
GTEx:253.1 nTPM
FANTOM5:75.5 Scaled Tags Per Million
Pig:46.1 nTPM
Mouse:33.7 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 235.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 222.9
2586 Male, age 75, left hemisphere 232.7
2411 Female, age 72, unknown 228.5
1827 Male, age 72, unknown 225.8
1870 Female, age 42, unknown 225.8
2019 Male, age 18, unknown 222.5
1833 Male, age 53, unknown 221.5
2219 Male, age 76, both hemispheres 221.0
1830 Male, age 51, unknown 218.4
2828 Female, age 72, unknown 216.4
2666 Male, age 74, left hemisphere 216.1
Dorsal raphe nucleus
nTPM: 226.4
2298 Female, age 72, unknown 235.9
2047 Male, age 72, unknown 226.9
1828 Male, age 53, unknown 224.5
2750 Male, age 76, both hemispheres 224.3
2016 Female, age 72, unknown 220.4
Inferior colliculus
nTPM: 235.7
2097 Female, age 72, unknown 240.3
1848 Female, age 42, unknown 236.2
2849 Male, age 72, unknown 234.2
1890 Male, age 53, unknown 232.0
Median raphe nucleus
nTPM: 223.4
2220 Male, age 76, midline 223.4
Pedunculopontine tegmental nucleus
nTPM: 225.7
2334 Male, age 80, both hemispheres 235.1
1921 Female, age 85, both hemispheres 230.4
2338 Male, age 61, both hemispheres 211.6
Periaquaductal grey, anterior
nTPM: 231.4
2502 Female, age 75, unknown 239.9
1947 Male, age 18, unknown 229.5
1795 Male, age 51, unknown 224.9
Periaquaductal grey, dorsal
nTPM: 221.1
2464 Female, age 72, unknown 224.4
1840 Male, age 53, unknown 224.0
2850 Male, age 76, both hemispheres 219.2
1831 Male, age 72, unknown 216.8
Periaquaductal grey, lateral
nTPM: 215.9
2140 Male, age 76, both hemispheres 219.1
2053 Male, age 18, unknown 214.7
2272 Male, age 74, both hemispheres 213.9
Pretectal area
nTPM: 222.4
2224 Female, age 72, unknown 232.8
1817 Female, age 42, unknown 230.4
2007 Male, age 72, unknown 227.0
2316 Male, age 76, right hemisphere 226.9
2825 Male, age 18, unknown 226.4
1816 Male, age 51, unknown 223.9
1944 Female, age 72, unknown 222.8
1815 Male, age 53, unknown 219.8
2667 Female, age 75, unknown 217.1
2273 Male, age 74, both hemispheres 212.8
2407 Male, age 75, both hemispheres 206.1
Red nucleus
nTPM: 224.9
2503 Female, age 72, unknown 233.1
1821 Female, age 72, unknown 230.4
2227 Male, age 72, unknown 228.9
2588 Male, age 74, left hemisphere 228.9
2785 Male, age 18, unknown 228.9
2769 Male, age 72, unknown 228.6
2725 Female, age 75, unknown 223.4
1954 Female, age 42, unknown 221.4
1904 Male, age 53, unknown 221.2
1865 Male, age 51, unknown 219.4
2823 Male, age 76, right hemisphere 217.9
2584 Male, age 75, left hemisphere 216.4
Substantia nigra
nTPM: 220.1
1916 Female, age 42, unknown 230.2
1851 Male, age 51, unknown 227.8
2665 Male, age 74, both hemispheres 225.2
1889 Female, age 72, unknown 224.6
2699 Male, age 18, unknown 220.2
2241 Male, age 72, unknown 218.0
1941 Male, age 53, unknown 217.6
2590 Female, age 75, unknown 216.9
2583 Male, age 75, right hemisphere 211.9
2409 Female, age 72, unknown 209.0
Superior colliculus
nTPM: 222.5
1796 Male, age 53, unknown 232.8
1895 Male, age 76, right hemisphere 230.9
2587 Male, age 74, left hemisphere 227.3
1839 Male, age 51, unknown 224.8
2668 Female, age 75, unknown 224.2
2664 Male, age 75, both hemispheres 220.2
2087 Female, age 72, unknown 218.6
2261 Male, age 18, unknown 216.4
1913 Female, age 42, unknown 215.6
1995 Male, age 72, unknown 213.9
Ventral tegmental area
nTPM: 226.1
1915 Female, age 42, unknown 231.1
1942 Male, age 51, unknown 228.6
2021 Male, age 53, unknown 226.5
2410 Female, age 72, unknown 225.3
2218 Male, age 76, both hemispheres 223.2
2223 Female, age 72, unknown 221.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 253.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 253.1
Samples: 139

Max nTPM: 628.9
Min nTPM: 145.2
Std nTPM: 74.2
Median nTPM: 240.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 628.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 519.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 494.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 483.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 407.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 379.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 376.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 368.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 365.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 358.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 357.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.5
FF:10158-103A5 76 years, female 75.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.1
Pig sample Sample description nTPM
Midbrain
nTPM: 36.9
Samples: 4

Max nTPM: 40.1
Min nTPM: 32.7
Sample A Female 35.8
Sample B Female 40.1
Sample C Male 39.1
Sample D Male 32.7
Periaqueductal gray
nTPM: 26.4
Samples: 3

Max nTPM: 31.0
Min nTPM: 20.2
Sample B Female 31.0
Sample C Male 28.1
Sample D Male 20.2
Substantia nigra
nTPM: 35.9
Samples: 4

Max nTPM: 58.6
Min nTPM: 15.8
Sample A Female 58.6
Sample B Female 36.0
Sample C Male 33.0
Sample D Male 15.8
Superior colliculi
nTPM: 46.2
Samples: 4

Max nTPM: 67.7
Min nTPM: 29.5
Sample A Female 67.7
Sample B Female 48.9
Sample C Male 38.5
Sample D Male 29.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.7
Samples: 4

Max nTPM: 46.1
Min nTPM: 24.7
Sample A Male 46.1
Sample B Male 28.5
Sample C Female 24.7
Sample D Female 35.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
386251 Antisense, RP_040804_01_E02, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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