MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.7 nTPM
HPA:42.7 nTPM
GTEx:60.8 nTPM
FANTOM5:97.7 Scaled Tags Per Million
Pig:21.2 nTPM
Mouse:76.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.8
2019 Male, age 18, unknown 46.7
2411 Female, age 72, unknown 43.4
1870 Female, age 42, unknown 41.9
2666 Male, age 74, left hemisphere 41.2
1830 Male, age 51, unknown 40.5
1833 Male, age 53, unknown 40.4
2219 Male, age 76, both hemispheres 40.1
1827 Male, age 72, unknown 39.4
2828 Female, age 72, unknown 37.4
2586 Male, age 75, left hemisphere 37.1
Dorsal raphe nucleus
nTPM: 39.7
1828 Male, age 53, unknown 41.5
2016 Female, age 72, unknown 40.4
2750 Male, age 76, both hemispheres 40.3
2047 Male, age 72, unknown 39.0
2298 Female, age 72, unknown 37.1
Inferior colliculus
nTPM: 41.3
2097 Female, age 72, unknown 42.6
1890 Male, age 53, unknown 41.9
1848 Female, age 42, unknown 41.3
2849 Male, age 72, unknown 39.3
Median raphe nucleus
nTPM: 38.5
2220 Male, age 76, midline 38.5
Pedunculopontine tegmental nucleus
nTPM: 42.6
2334 Male, age 80, both hemispheres 44.8
2338 Male, age 61, both hemispheres 43.5
1921 Female, age 85, both hemispheres 39.5
Periaquaductal grey, anterior
nTPM: 38.1
2502 Female, age 75, unknown 40.1
1947 Male, age 18, unknown 38.2
1795 Male, age 51, unknown 36.0
Periaquaductal grey, dorsal
nTPM: 37.9
2464 Female, age 72, unknown 39.7
2850 Male, age 76, both hemispheres 37.8
1831 Male, age 72, unknown 37.2
1840 Male, age 53, unknown 36.8
Periaquaductal grey, lateral
nTPM: 36.6
2053 Male, age 18, unknown 37.4
2272 Male, age 74, both hemispheres 37.3
2140 Male, age 76, both hemispheres 35.2
Pretectal area
nTPM: 39.9
1817 Female, age 42, unknown 44.9
2007 Male, age 72, unknown 43.1
1816 Male, age 51, unknown 42.6
1944 Female, age 72, unknown 41.8
1815 Male, age 53, unknown 41.3
2273 Male, age 74, both hemispheres 38.6
2316 Male, age 76, right hemisphere 38.3
2224 Female, age 72, unknown 37.8
2407 Male, age 75, both hemispheres 37.1
2825 Male, age 18, unknown 37.1
2667 Female, age 75, unknown 35.9
Red nucleus
nTPM: 42.7
1821 Female, age 72, unknown 47.6
2503 Female, age 72, unknown 45.0
2588 Male, age 74, left hemisphere 44.2
2823 Male, age 76, right hemisphere 43.3
1865 Male, age 51, unknown 43.0
1954 Female, age 42, unknown 42.7
1904 Male, age 53, unknown 42.0
2227 Male, age 72, unknown 42.0
2769 Male, age 72, unknown 41.4
2785 Male, age 18, unknown 41.3
2725 Female, age 75, unknown 41.1
2584 Male, age 75, left hemisphere 38.3
Substantia nigra
nTPM: 40.9
1941 Male, age 53, unknown 44.2
1916 Female, age 42, unknown 43.9
2241 Male, age 72, unknown 42.9
2590 Female, age 75, unknown 42.3
1889 Female, age 72, unknown 42.1
2665 Male, age 74, both hemispheres 40.7
1851 Male, age 51, unknown 40.4
2699 Male, age 18, unknown 39.5
2409 Female, age 72, unknown 37.2
2583 Male, age 75, right hemisphere 36.2
Superior colliculus
nTPM: 39.8
2587 Male, age 74, left hemisphere 42.9
1895 Male, age 76, right hemisphere 42.2
2668 Female, age 75, unknown 41.8
1913 Female, age 42, unknown 41.5
1995 Male, age 72, unknown 40.5
1839 Male, age 51, unknown 40.3
2261 Male, age 18, unknown 38.7
2087 Female, age 72, unknown 38.6
1796 Male, age 53, unknown 36.5
2664 Male, age 75, both hemispheres 35.5
Ventral tegmental area
nTPM: 40.7
2410 Female, age 72, unknown 43.2
2223 Female, age 72, unknown 41.7
1915 Female, age 42, unknown 40.5
2218 Male, age 76, both hemispheres 40.3
1942 Male, age 51, unknown 39.8
2021 Male, age 53, unknown 39.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.8
Samples: 139

Max nTPM: 132.9
Min nTPM: 35.0
Std nTPM: 15.1
Median nTPM: 58.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 132.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 122.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 106.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 99.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 99.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 90.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 87.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 86.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 84.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 81.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 80.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.7
FF:10158-103A5 76 years, female 97.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.2
Pig sample Sample description nTPM
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 22.5
Min nTPM: 17.8
Sample A Female 22.5
Sample B Female 17.9
Sample C Male 19.4
Sample D Male 17.8
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 18.2
Min nTPM: 15.1
Sample B Female 15.1
Sample C Male 17.3
Sample D Male 18.2
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 20.8
Min nTPM: 16.5
Sample A Female 20.8
Sample B Female 16.5
Sample C Male 16.8
Sample D Male 17.5
Superior colliculi
nTPM: 21.2
Samples: 4

Max nTPM: 22.5
Min nTPM: 19.6
Sample A Female 22.5
Sample B Female 19.6
Sample C Male 22.5
Sample D Male 20.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 76.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.6
Samples: 4

Max nTPM: 77.9
Min nTPM: 75.8
Sample A Male 75.8
Sample B Male 77.9
Sample C Female 76.1
Sample D Female 76.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
72000624 Antisense, RP_050915_02_D03, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.