BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.5 nTPM
HPA:31.5 nTPM
GTEx:68.8 nTPM
FANTOM5:109.2 Scaled Tags Per Million
Pig:80.2 nTPM
Mouse:101.1 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 31.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 28.7
2481 Female, age 94, left hemisphere 31.6
2288 Male, age 75, left hemisphere 29.3
1857 Female, age 85, left hemisphere 28.8
2290 Female, age 72, unknown 28.6
2846 Female, age 79, unknown 28.5
1854 Male, age 80, left hemisphere 27.8
1781 Male, age 74, unknown 27.6
2289 Male, age 61, right hemisphere 27.1
Claustrum
nTPM: 27.1
2491 Male, age 75, both hemispheres 28.1
1956 Male, age 74, unknown 27.9
2392 Female, age 94, both hemispheres 27.8
2198 Male, age 80, both hemispheres 27.5
2196 Female, age 79, unknown 27.0
2292 Female, age 85, both hemispheres 26.9
2568 Male, age 61, both hemispheres 26.8
2284 Female, age 91, both hemispheres 26.1
2645 Female, age 72, unknown 26.0
Globus pallidus, externus
nTPM: 31.5
2772 Female, age 79, unknown 35.4
1996 Male, age 80, right hemisphere 34.7
2395 Male, age 75, both hemispheres 31.2
2646 Male, age 61, right hemisphere 30.6
2567 Female, age 72, unknown 25.5
Globus pallidus, internus
nTPM: 31.0
2483 Female, age 94, right hemisphere 33.1
2778 Female, age 91, both hemispheres 32.5
2037 Male, age 80, right hemisphere 32.3
2287 Male, age 75, right hemisphere 32.1
1818 Male, age 74, unknown 32.0
2111 Female, age 85, right hemisphere 27.9
2566 Female, age 72, unknown 26.9
Nucleus accumbens
nTPM: 28.2
2286 Male, age 75, left hemisphere 30.8
2391 Female, age 94, left hemisphere 29.6
1806 Female, age 85, left hemisphere 28.3
2698 Female, age 72, unknown 27.8
2824 Male, age 61, right hemisphere 27.8
2732 Male, age 80, right hemisphere 27.6
1856 Female, age 91, right hemisphere 27.0
1783 Male, age 74, unknown 26.4
Nucleus basalis of Meynert
nTPM: 28.6
2569 Male, age 61, both hemispheres 31.8
2484 Female, age 94, left hemisphere 27.6
2821 Male, age 75, both hemispheres 27.6
2393 Male, age 80, right hemisphere 27.4
Nucleus of the diagonal band
nTPM: 27.6
1812 Female, age 91, both hemispheres 30.2
2775 Male, age 80, right hemisphere 28.0
1979 Male, age 74, unknown 27.0
2029 Male, age 61, right hemisphere 26.9
2195 Female, age 85, both hemispheres 25.8
Olfactory tubercle
nTPM: 27.5
1846 Male, age 80, right hemisphere 29.1
1998 Female, age 91, both hemispheres 27.4
2856 Male, age 75, right hemisphere 27.1
2487 Female, age 94, left hemisphere 26.5
Putamen
nTPM: 27.3
2482 Female, age 94, left hemisphere 29.4
1937 Female, age 91, right hemisphere 28.1
2466 Female, age 79, unknown 27.8
1838 Male, age 80, right hemisphere 27.1
1829 Male, age 74, unknown 26.4
2647 Male, age 75, left hemisphere 26.2
2489 Female, age 72, unknown 25.8
Septal nuclei
nTPM: 27.6
2031 Female, age 72, unknown 29.3
2009 Female, age 91, both hemispheres 28.6
2394 Male, age 61, left hemisphere 27.2
1960 Male, age 74, unknown 27.1
2059 Female, age 85, both hemispheres 27.1
2629 Female, age 94, right hemisphere 27.1
2199 Male, age 80, right hemisphere 26.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 68.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 66.5
Samples: 246

Max nTPM: 145.7
Min nTPM: 39.5
Std nTPM: 16.1
Median nTPM: 63.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 145.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 133.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 132.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 120.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 118.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 118.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 101.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 99.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 96.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 95.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 94.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 56.8
Samples: 246

Max nTPM: 124.1
Min nTPM: 22.8
Std nTPM: 14.7
Median nTPM: 53.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 124.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 120.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 100.9
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 100.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 99.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 96.8
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 94.0
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 88.9
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 88.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 85.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 85.3
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Brain - Putamen (basal ganglia)
Average nTPM: 68.8
Samples: 205

Max nTPM: 147.6
Min nTPM: 35.8
Std nTPM: 16.7
Median nTPM: 66.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 147.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 141.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 126.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 113.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 109.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 105.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 103.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 102.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 102.0
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 100.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 99.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 81.4
FF:10164-103B2 76 years, female 81.4
Globus pallidus
Scaled Tags Per Million: 109.2
FF:10175-103C4 60 years, female 119.1
FF:10161-103A8 76 years, female 99.3
Nucleus accumbens
Scaled Tags Per Million: 105.3
FF:10037-101F1 23-56 years, mixed 105.3
Putamen
Scaled Tags Per Million: 53.1
FF:10176-103C5 60 years, female 53.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 80.2
Pig sample Sample description nTPM
Caudate
nTPM: 63.4
Samples: 4

Max nTPM: 70.7
Min nTPM: 55.0
Sample A Female 61.5
Sample B Female 66.4
Sample C Male 70.7
Sample D Male 55.0
Putamen
nTPM: 71.7
Samples: 4

Max nTPM: 84.2
Min nTPM: 59.6
Sample A Female 70.8
Sample B Female 59.6
Sample C Male 84.2
Sample D Male 72.1
Septum
nTPM: 80.3
Samples: 4

Max nTPM: 94.2
Min nTPM: 69.3
Sample A Female 74.0
Sample B Female 69.3
Sample C Male 94.2
Sample D Male 83.6
Ventral pallidum
nTPM: 69.8
Samples: 4

Max nTPM: 81.2
Min nTPM: 56.1
Sample A Female 56.1
Sample B Female 73.3
Sample C Male 81.2
Sample D Male 68.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 101.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 93.0
Samples: 4

Max nTPM: 96.7
Min nTPM: 86.7
Sample A Male 93.3
Sample B Male 96.7
Sample C Female 95.4
Sample D Female 86.7
Septum
nTPM: 86.8
Samples: 4

Max nTPM: 92.9
Min nTPM: 80.8
Sample A Male 85.2
Sample B Male 88.3
Sample C Female 92.9
Sample D Female 80.8
Ventral forebrain
nTPM: 101.1
Samples: 4

Max nTPM: 114.7
Min nTPM: 94.0
Sample A Male 96.3
Sample B Male 94.0
Sample C Female 114.7
Sample D Female 99.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
68151363 Antisense, RP_041116_01_A08, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.6
68151363 Antisense, RP_041116_01_A08, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

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