BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA:36.3 nTPM
GTEx:16.9 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:22.5 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA034571
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.3
2481 Female, age 94, left hemisphere 42.7
2289 Male, age 61, right hemisphere 40.6
2290 Female, age 72, unknown 36.3
1854 Male, age 80, left hemisphere 35.9
1857 Female, age 85, left hemisphere 35.9
2288 Male, age 75, left hemisphere 33.8
2846 Female, age 79, unknown 32.9
1781 Male, age 74, unknown 32.6
Claustrum
nTPM: 32.2
2645 Female, age 72, unknown 34.0
2196 Female, age 79, unknown 33.1
2491 Male, age 75, both hemispheres 33.0
2284 Female, age 91, both hemispheres 32.9
2568 Male, age 61, both hemispheres 32.8
1956 Male, age 74, unknown 31.7
2392 Female, age 94, both hemispheres 31.7
2198 Male, age 80, both hemispheres 31.2
2292 Female, age 85, both hemispheres 29.2
Globus pallidus, externus
nTPM: 31.2
2646 Male, age 61, right hemisphere 33.7
2772 Female, age 79, unknown 31.7
1996 Male, age 80, right hemisphere 30.8
2567 Female, age 72, unknown 30.8
2395 Male, age 75, both hemispheres 29.2
Globus pallidus, internus
nTPM: 29.3
2483 Female, age 94, right hemisphere 33.0
2037 Male, age 80, right hemisphere 29.3
2778 Female, age 91, both hemispheres 28.8
1818 Male, age 74, unknown 28.6
2566 Female, age 72, unknown 28.6
2287 Male, age 75, right hemisphere 28.4
2111 Female, age 85, right hemisphere 28.0
Nucleus accumbens
nTPM: 34.8
2824 Male, age 61, right hemisphere 36.5
2286 Male, age 75, left hemisphere 35.1
1806 Female, age 85, left hemisphere 34.9
1856 Female, age 91, right hemisphere 34.9
1783 Male, age 74, unknown 34.8
2391 Female, age 94, left hemisphere 34.2
2732 Male, age 80, right hemisphere 34.2
2698 Female, age 72, unknown 33.9
Nucleus basalis of Meynert
nTPM: 33.1
2393 Male, age 80, right hemisphere 35.0
2569 Male, age 61, both hemispheres 35.0
2484 Female, age 94, left hemisphere 32.8
2821 Male, age 75, both hemispheres 29.4
Nucleus of the diagonal band
nTPM: 33.9
1979 Male, age 74, unknown 36.0
2029 Male, age 61, right hemisphere 34.2
2195 Female, age 85, both hemispheres 33.7
2775 Male, age 80, right hemisphere 32.9
1812 Female, age 91, both hemispheres 32.7
Olfactory tubercle
nTPM: 34.4
2856 Male, age 75, right hemisphere 36.5
1846 Male, age 80, right hemisphere 34.3
2487 Female, age 94, left hemisphere 33.9
1998 Female, age 91, both hemispheres 32.8
Putamen
nTPM: 34.2
2647 Male, age 75, left hemisphere 35.8
2482 Female, age 94, left hemisphere 35.2
2489 Female, age 72, unknown 34.7
1937 Female, age 91, right hemisphere 34.5
1838 Male, age 80, right hemisphere 33.7
2466 Female, age 79, unknown 32.7
1829 Male, age 74, unknown 32.5
Septal nuclei
nTPM: 33.9
2199 Male, age 80, right hemisphere 35.5
2059 Female, age 85, both hemispheres 34.6
1960 Male, age 74, unknown 34.4
2031 Female, age 72, unknown 34.3
2009 Female, age 91, both hemispheres 33.8
2629 Female, age 94, right hemisphere 33.2
2394 Male, age 61, left hemisphere 31.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.2
Samples: 246

Max nTPM: 45.3
Min nTPM: 7.5
Std nTPM: 6.4
Median nTPM: 14.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 45.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 41.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 40.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 38.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 36.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 32.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 32.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 32.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 31.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 31.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 30.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.9
Samples: 246

Max nTPM: 78.7
Min nTPM: 4.8
Std nTPM: 8.2
Median nTPM: 14.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 78.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 51.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 44.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 44.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 37.5
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 36.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 36.1
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 35.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 34.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 33.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 33.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 16.4
Samples: 205

Max nTPM: 40.3
Min nTPM: 5.6
Std nTPM: 6.3
Median nTPM: 15.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 40.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 39.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 35.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 33.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 33.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 33.0
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 30.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 30.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 30.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 29.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 29.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.0
FF:10164-103B2 76 years, female 21.0
Globus pallidus
Scaled Tags Per Million: 8.3
FF:10175-103C4 60 years, female 8.6
FF:10161-103A8 76 years, female 7.9
Nucleus accumbens
Scaled Tags Per Million: 16.2
FF:10037-101F1 23-56 years, mixed 16.2
Putamen
Scaled Tags Per Million: 23.4
FF:10176-103C5 60 years, female 23.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Caudate
nTPM: 10.1
Samples: 4

Max nTPM: 11.8
Min nTPM: 8.0
Sample A Female 10.1
Sample B Female 8.0
Sample C Male 11.8
Sample D Male 10.5
Putamen
nTPM: 10.8
Samples: 4

Max nTPM: 14.3
Min nTPM: 8.9
Sample A Female 10.3
Sample B Female 8.9
Sample C Male 14.3
Sample D Male 9.7
Septum
nTPM: 9.3
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.2
Sample A Female 8.5
Sample B Female 8.2
Sample C Male 11.7
Sample D Male 8.9
Ventral pallidum
nTPM: 10.2
Samples: 4

Max nTPM: 12.7
Min nTPM: 7.8
Sample A Female 9.3
Sample B Female 11.1
Sample C Male 12.7
Sample D Male 7.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.5
Samples: 4

Max nTPM: 28.5
Min nTPM: 16.9
Sample A Male 16.9
Sample B Male 20.0
Sample C Female 28.5
Sample D Female 24.5
Septum
nTPM: 18.4
Samples: 4

Max nTPM: 25.5
Min nTPM: 11.5
Sample A Male 11.5
Sample B Male 15.4
Sample C Female 21.3
Sample D Female 25.5
Ventral forebrain
nTPM: 21.7
Samples: 4

Max nTPM: 26.1
Min nTPM: 17.5
Sample A Male 22.3
Sample B Male 20.7
Sample C Female 17.5
Sample D Female 26.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
74363348 Antisense, RP_051019_01_D09, Mouse strain C57BL/6J (56 days, male) 0.1
72283450 Antisense, RP_051019_01_D09, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
74363348 Antisense, RP_051019_01_D09, Mouse strain C57BL/6J (56 days, male) 0.0
72283450 Antisense, RP_051019_01_D09, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.