BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:12.3 nTPM
HPA:12.3 nTPM
GTEx:15.3 nTPM
FANTOM5:70.9 Scaled Tags Per Million
Pig:14.8 nTPM
Mouse:48.8 nTPM
Allen mouse:11.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA053198Antibody HPA063561Antibody CAB037058
Glial cells MediumLowLow
Neuronal cells Not detectedMediumMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.0
2290 Female, age 72, unknown 13.9
2289 Male, age 61, right hemisphere 13.0
2846 Female, age 79, unknown 12.7
1854 Male, age 80, left hemisphere 11.3
1857 Female, age 85, left hemisphere 11.3
1781 Male, age 74, unknown 9.5
2481 Female, age 94, left hemisphere 4.6
2288 Male, age 75, left hemisphere 3.7
Claustrum
nTPM: 3.2
2196 Female, age 79, unknown 8.3
2198 Male, age 80, both hemispheres 3.4
2284 Female, age 91, both hemispheres 3.3
2645 Female, age 72, unknown 3.1
2568 Male, age 61, both hemispheres 2.8
1956 Male, age 74, unknown 2.1
2392 Female, age 94, both hemispheres 2.1
2292 Female, age 85, both hemispheres 2.0
2491 Male, age 75, both hemispheres 1.3
Globus pallidus, externus
nTPM: 2.1
2395 Male, age 75, both hemispheres 6.7
2772 Female, age 79, unknown 2.1
1996 Male, age 80, right hemisphere 0.9
2646 Male, age 61, right hemisphere 0.5
2567 Female, age 72, unknown 0.2
Globus pallidus, internus
nTPM: 1.1
2483 Female, age 94, right hemisphere 3.2
2287 Male, age 75, right hemisphere 1.9
2037 Male, age 80, right hemisphere 0.8
2778 Female, age 91, both hemispheres 0.8
2111 Female, age 85, right hemisphere 0.7
2566 Female, age 72, unknown 0.4
1818 Male, age 74, unknown 0.0
Nucleus accumbens
nTPM: 12.3
1856 Female, age 91, right hemisphere 20.8
1783 Male, age 74, unknown 19.8
2824 Male, age 61, right hemisphere 18.5
2698 Female, age 72, unknown 13.6
1806 Female, age 85, left hemisphere 13.2
2286 Male, age 75, left hemisphere 4.7
2732 Male, age 80, right hemisphere 4.4
2391 Female, age 94, left hemisphere 3.7
Nucleus basalis of Meynert
nTPM: 4.7
2484 Female, age 94, left hemisphere 6.9
2821 Male, age 75, both hemispheres 5.9
2393 Male, age 80, right hemisphere 5.1
2569 Male, age 61, both hemispheres 1.1
Nucleus of the diagonal band
nTPM: 7.1
1812 Female, age 91, both hemispheres 9.9
2195 Female, age 85, both hemispheres 8.6
2029 Male, age 61, right hemisphere 6.2
2775 Male, age 80, right hemisphere 6.2
1979 Male, age 74, unknown 4.4
Olfactory tubercle
nTPM: 4.7
1846 Male, age 80, right hemisphere 6.7
2487 Female, age 94, left hemisphere 6.1
1998 Female, age 91, both hemispheres 3.8
2856 Male, age 75, right hemisphere 2.2
Putamen
nTPM: 8.0
1937 Female, age 91, right hemisphere 14.3
1838 Male, age 80, right hemisphere 13.3
2466 Female, age 79, unknown 10.3
1829 Male, age 74, unknown 7.1
2482 Female, age 94, left hemisphere 5.2
2489 Female, age 72, unknown 3.8
2647 Male, age 75, left hemisphere 2.2
Septal nuclei
nTPM: 7.2
1960 Male, age 74, unknown 12.4
2031 Female, age 72, unknown 11.1
2009 Female, age 91, both hemispheres 7.5
2629 Female, age 94, right hemisphere 6.0
2059 Female, age 85, both hemispheres 5.4
2199 Male, age 80, right hemisphere 4.7
2394 Male, age 61, left hemisphere 3.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.4
Samples: 246

Max nTPM: 59.4
Min nTPM: 2.2
Std nTPM: 6.5
Median nTPM: 7.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 59.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 33.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 29.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 28.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 25.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 25.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 24.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 24.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 23.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 23.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 22.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.3
Samples: 246

Max nTPM: 55.2
Min nTPM: 1.3
Std nTPM: 9.6
Median nTPM: 14.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 55.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 44.7
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 41.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 39.7
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 39.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 39.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 37.6
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 33.5
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 33.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 31.4
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 31.2
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Brain - Putamen (basal ganglia)
Average nTPM: 7.1
Samples: 205

Max nTPM: 29.3
Min nTPM: 1.5
Std nTPM: 4.7
Median nTPM: 5.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 29.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 24.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 23.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 23.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 22.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 22.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 18.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 18.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 18.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 18.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 17.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 70.9
FF:10164-103B2 76 years, female 70.9
Globus pallidus
Scaled Tags Per Million: 11.6
FF:10175-103C4 60 years, female 11.8
FF:10161-103A8 76 years, female 11.3
Nucleus accumbens
Scaled Tags Per Million: 38.2
FF:10037-101F1 23-56 years, mixed 38.2
Putamen
Scaled Tags Per Million: 59.4
FF:10176-103C5 60 years, female 59.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.8
Pig sample Sample description nTPM
Caudate
nTPM: 14.8
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.5
Sample A Female 13.5
Sample B Female 17.4
Sample C Male 13.7
Sample D Male 14.6
Putamen
nTPM: 11.7
Samples: 4

Max nTPM: 15.7
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 15.7
Sample C Male 11.2
Sample D Male 12.1
Septum
nTPM: 8.5
Samples: 4

Max nTPM: 12.3
Min nTPM: 4.8
Sample A Female 12.3
Sample B Female 6.9
Sample C Male 4.8
Sample D Male 9.8
Ventral pallidum
nTPM: 10.7
Samples: 4

Max nTPM: 16.7
Min nTPM: 4.9
Sample A Female 16.7
Sample B Female 6.0
Sample C Male 4.9
Sample D Male 15.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 48.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 34.5
Samples: 4

Max nTPM: 39.8
Min nTPM: 31.5
Sample A Male 33.0
Sample B Male 33.7
Sample C Female 31.5
Sample D Female 39.8
Septum
nTPM: 48.8
Samples: 4

Max nTPM: 64.2
Min nTPM: 27.3
Sample A Male 27.3
Sample B Male 64.2
Sample C Female 49.2
Sample D Female 54.4
Ventral forebrain
nTPM: 18.5
Samples: 4

Max nTPM: 21.5
Min nTPM: 15.9
Sample A Male 16.8
Sample B Male 15.9
Sample C Female 19.8
Sample D Female 21.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.3
75496131 Antisense, RP_060523_03_G01, Mouse strain C57BL/6J (56 days, male) 14.2
75457370 Antisense, RP_060523_03_G01, Mouse strain C57BL/6J (56 days, male) 14.0
75457368 Antisense, RP_060523_03_E01, Mouse strain C57BL/6J (56 days, male) 13.8
75457371 Antisense, RP_060523_03_H01, Mouse strain C57BL/6J (56 days, male) 13.6
75496129 Antisense, RP_060523_03_E01, Mouse strain C57BL/6J (56 days, male) 13.3
75496130 Antisense, RP_060523_03_F01, Mouse strain C57BL/6J (56 days, male) 12.4
75492196 Antisense, RP_060523_03_H01, Mouse strain C57BL/6J (56 days, male) 12.3
75492195 Antisense, RP_060523_03_G01, Mouse strain C57BL/6J (56 days, male) 12.3
75457369 Antisense, RP_060523_03_F01, Mouse strain C57BL/6J (56 days, male) 12.2
Pallidum
Expression energy: 7.7
75457370 Antisense, RP_060523_03_G01, Mouse strain C57BL/6J (56 days, male) 11.3
75496131 Antisense, RP_060523_03_G01, Mouse strain C57BL/6J (56 days, male) 11.2
75457371 Antisense, RP_060523_03_H01, Mouse strain C57BL/6J (56 days, male) 11.0
75492195 Antisense, RP_060523_03_G01, Mouse strain C57BL/6J (56 days, male) 10.2
75492196 Antisense, RP_060523_03_H01, Mouse strain C57BL/6J (56 days, male) 9.7
75496132 Antisense, RP_060523_03_H01, Mouse strain C57BL/6J (56 days, male) 8.9
75496360 Antisense, RP_060523_03_H01, Mouse strain C57BL/6J (56 days, male) 7.7
75496129 Antisense, RP_060523_03_E01, Mouse strain C57BL/6J (56 days, male) 7.3
75496358 Antisense, RP_060523_03_G01, Mouse strain C57BL/6J (56 days, male) 7.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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