BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.5 nTPM
HPA:0.5 nTPM
GTEx:1.7 nTPM
FANTOM5:4.9 Scaled Tags Per Million
Pig:0.3 nTPM
Mouse:0.6 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038081
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.5
2290 Female, age 72, unknown 1.0
1781 Male, age 74, unknown 0.7
1857 Female, age 85, left hemisphere 0.7
2288 Male, age 75, left hemisphere 0.7
1854 Male, age 80, left hemisphere 0.6
2846 Female, age 79, unknown 0.4
2481 Female, age 94, left hemisphere 0.2
2289 Male, age 61, right hemisphere 0.1
Claustrum
nTPM: 0.1
2196 Female, age 79, unknown 0.5
2568 Male, age 61, both hemispheres 0.2
2645 Female, age 72, unknown 0.2
1956 Male, age 74, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2491 Male, age 75, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.5
1806 Female, age 85, left hemisphere 0.9
2824 Male, age 61, right hemisphere 0.9
1856 Female, age 91, right hemisphere 0.6
1783 Male, age 74, unknown 0.5
2286 Male, age 75, left hemisphere 0.5
2698 Female, age 72, unknown 0.5
2391 Female, age 94, left hemisphere 0.3
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.2
2393 Male, age 80, right hemisphere 0.7
2484 Female, age 94, left hemisphere 0.2
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.4
2195 Female, age 85, both hemispheres 0.9
1979 Male, age 74, unknown 0.5
1812 Female, age 91, both hemispheres 0.3
2775 Male, age 80, right hemisphere 0.3
2029 Male, age 61, right hemisphere 0.1
Olfactory tubercle
nTPM: 0.4
1998 Female, age 91, both hemispheres 0.7
1846 Male, age 80, right hemisphere 0.4
2856 Male, age 75, right hemisphere 0.3
2487 Female, age 94, left hemisphere 0.1
Putamen
nTPM: 0.4
1838 Male, age 80, right hemisphere 1.4
2466 Female, age 79, unknown 0.6
2489 Female, age 72, unknown 0.4
1829 Male, age 74, unknown 0.3
1937 Female, age 91, right hemisphere 0.2
2647 Male, age 75, left hemisphere 0.2
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 0.1
2629 Female, age 94, right hemisphere 0.4
2031 Female, age 72, unknown 0.2
2199 Male, age 80, right hemisphere 0.1
1960 Male, age 74, unknown 0.0
2009 Female, age 91, both hemispheres 0.0
2059 Female, age 85, both hemispheres 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.0
Samples: 246

Max nTPM: 4.5
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 0.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 4.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 4.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 4.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 3.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 3.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 3.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 3.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 3.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 3.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 2.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.7
Samples: 246

Max nTPM: 5.2
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 1.6
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 5.2
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 5.0
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 4.6
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 4.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 4.5
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 4.5
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 4.4
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 4.3
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 4.2
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 4.2
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 4.1
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Brain - Putamen (basal ganglia)
Average nTPM: 0.8
Samples: 205

Max nTPM: 4.1
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 0.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 4.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 3.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 3.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 3.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 3.1
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 2.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 2.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 2.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 2.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 2.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 2.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.9
FF:10164-103B2 76 years, female 4.9
Globus pallidus
Scaled Tags Per Million: 1.3
FF:10175-103C4 60 years, female 1.5
FF:10161-103A8 76 years, female 1.0
Nucleus accumbens
Scaled Tags Per Million: 4.1
FF:10037-101F1 23-56 years, mixed 4.1
Putamen
Scaled Tags Per Million: 4.4
FF:10176-103C5 60 years, female 4.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.3
Pig sample Sample description nTPM
Caudate
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.2
Sample C Male 0.3
Sample D Male 0.3
Putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.2
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.4
Sample C Male 0.2
Sample D Male 0.2
Ventral pallidum
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.3
Sample C Male 0.2
Sample D Male 0.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Male 0.6
Sample B Male 0.3
Sample C Female 0.5
Sample D Female 0.6
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Male 0.4
Sample B Male 0.1
Sample C Female 0.2
Sample D Female 0.4
Ventral forebrain
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Male 0.7
Sample B Male 0.7
Sample C Female 0.4
Sample D Female 0.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
2597 Antisense, RP_040526_02_G04, Mouse strain C57BL/6J (56 days, male) 0.8
2598 Antisense, RP_040526_02_G04, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.9
2597 Antisense, RP_040526_02_G04, Mouse strain C57BL/6J (56 days, male) 0.9
2598 Antisense, RP_040526_02_G04, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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