BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:40.9 nTPM
HPA:40.9 nTPM
GTEx:50.6 nTPM
FANTOM5:135.4 Scaled Tags Per Million
Pig:51.8 nTPM
Mouse:111.8 nTPM
Allen mouse:5.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA056981Antibody CAB012986
Glial cells MediumHigh
Neuronal cells LowHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.6
2481 Female, age 94, left hemisphere 45.8
1857 Female, age 85, left hemisphere 44.2
2290 Female, age 72, unknown 42.1
2846 Female, age 79, unknown 40.4
1854 Male, age 80, left hemisphere 39.9
2288 Male, age 75, left hemisphere 38.7
2289 Male, age 61, right hemisphere 38.3
1781 Male, age 74, unknown 35.1
Claustrum
nTPM: 36.6
2491 Male, age 75, both hemispheres 40.2
2392 Female, age 94, both hemispheres 40.0
1956 Male, age 74, unknown 39.3
2198 Male, age 80, both hemispheres 35.9
2196 Female, age 79, unknown 35.6
2284 Female, age 91, both hemispheres 35.5
2568 Male, age 61, both hemispheres 35.2
2645 Female, age 72, unknown 34.1
2292 Female, age 85, both hemispheres 33.1
Globus pallidus, externus
nTPM: 39.3
2395 Male, age 75, both hemispheres 42.7
2772 Female, age 79, unknown 42.4
1996 Male, age 80, right hemisphere 40.4
2646 Male, age 61, right hemisphere 38.1
2567 Female, age 72, unknown 32.8
Globus pallidus, internus
nTPM: 40.9
2483 Female, age 94, right hemisphere 55.9
2287 Male, age 75, right hemisphere 45.0
1818 Male, age 74, unknown 41.1
2778 Female, age 91, both hemispheres 37.5
2111 Female, age 85, right hemisphere 36.7
2037 Male, age 80, right hemisphere 35.6
2566 Female, age 72, unknown 34.5
Nucleus accumbens
nTPM: 39.8
1856 Female, age 91, right hemisphere 44.0
2391 Female, age 94, left hemisphere 43.3
1806 Female, age 85, left hemisphere 40.1
2698 Female, age 72, unknown 39.9
2286 Male, age 75, left hemisphere 39.3
2824 Male, age 61, right hemisphere 38.7
1783 Male, age 74, unknown 37.5
2732 Male, age 80, right hemisphere 36.1
Nucleus basalis of Meynert
nTPM: 40.0
2393 Male, age 80, right hemisphere 41.6
2484 Female, age 94, left hemisphere 39.7
2569 Male, age 61, both hemispheres 39.7
2821 Male, age 75, both hemispheres 39.0
Nucleus of the diagonal band
nTPM: 39.3
1812 Female, age 91, both hemispheres 41.5
2775 Male, age 80, right hemisphere 41.1
1979 Male, age 74, unknown 38.9
2195 Female, age 85, both hemispheres 37.8
2029 Male, age 61, right hemisphere 37.0
Olfactory tubercle
nTPM: 38.6
1846 Male, age 80, right hemisphere 42.8
1998 Female, age 91, both hemispheres 39.4
2856 Male, age 75, right hemisphere 37.3
2487 Female, age 94, left hemisphere 34.8
Putamen
nTPM: 38.7
2482 Female, age 94, left hemisphere 43.4
1937 Female, age 91, right hemisphere 41.3
2466 Female, age 79, unknown 40.0
1838 Male, age 80, right hemisphere 39.2
1829 Male, age 74, unknown 38.9
2647 Male, age 75, left hemisphere 35.3
2489 Female, age 72, unknown 32.9
Septal nuclei
nTPM: 38.6
2031 Female, age 72, unknown 43.2
2059 Female, age 85, both hemispheres 39.3
2199 Male, age 80, right hemisphere 39.3
1960 Male, age 74, unknown 38.0
2009 Female, age 91, both hemispheres 37.5
2394 Male, age 61, left hemisphere 37.1
2629 Female, age 94, right hemisphere 35.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 50.6
Samples: 246

Max nTPM: 140.4
Min nTPM: 14.9
Std nTPM: 14.6
Median nTPM: 49.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 140.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 104.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 98.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 94.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 94.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 91.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 91.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 89.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 83.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 80.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 80.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.3
Samples: 246

Max nTPM: 115.8
Min nTPM: 15.6
Std nTPM: 14.6
Median nTPM: 46.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 115.8
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 98.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 94.7
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 94.2
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 84.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 84.2
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 79.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 78.8
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 78.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 76.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 76.8
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Brain - Putamen (basal ganglia)
Average nTPM: 50.4
Samples: 205

Max nTPM: 134.4
Min nTPM: 22.8
Std nTPM: 14.7
Median nTPM: 48.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 134.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 105.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 98.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 91.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 90.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 87.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 83.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 82.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 79.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 78.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 77.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 135.4
FF:10164-103B2 76 years, female 135.4
Globus pallidus
Scaled Tags Per Million: 102.7
FF:10161-103A8 76 years, female 153.3
FF:10175-103C4 60 years, female 52.0
Nucleus accumbens
Scaled Tags Per Million: 89.0
FF:10037-101F1 23-56 years, mixed 89.0
Putamen
Scaled Tags Per Million: 103.8
FF:10176-103C5 60 years, female 103.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 51.8
Pig sample Sample description nTPM
Caudate
nTPM: 43.2
Samples: 4

Max nTPM: 49.9
Min nTPM: 38.0
Sample A Female 49.9
Sample B Female 41.9
Sample C Male 43.1
Sample D Male 38.0
Putamen
nTPM: 51.6
Samples: 4

Max nTPM: 64.6
Min nTPM: 41.3
Sample A Female 58.6
Sample B Female 41.9
Sample C Male 64.6
Sample D Male 41.3
Septum
nTPM: 51.8
Samples: 4

Max nTPM: 64.9
Min nTPM: 44.5
Sample A Female 64.9
Sample B Female 48.7
Sample C Male 49.2
Sample D Male 44.5
Ventral pallidum
nTPM: 46.4
Samples: 4

Max nTPM: 51.7
Min nTPM: 41.8
Sample A Female 51.7
Sample B Female 49.7
Sample C Male 41.8
Sample D Male 42.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 111.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 100.0
Samples: 4

Max nTPM: 103.2
Min nTPM: 96.7
Sample A Male 102.1
Sample B Male 96.7
Sample C Female 98.0
Sample D Female 103.2
Septum
nTPM: 111.8
Samples: 4

Max nTPM: 123.7
Min nTPM: 94.2
Sample A Male 94.2
Sample B Male 118.5
Sample C Female 123.7
Sample D Female 110.6
Ventral forebrain
nTPM: 90.9
Samples: 4

Max nTPM: 99.6
Min nTPM: 86.8
Sample A Male 87.7
Sample B Male 86.8
Sample C Female 99.6
Sample D Female 89.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.4
69873648 Antisense, RP_050512_01_F09, Mouse strain C57BL/6J (56 days, male) 5.4
Pallidum
Expression energy: 5.3
69873648 Antisense, RP_050512_01_F09, Mouse strain C57BL/6J (56 days, male) 5.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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