MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.6 nTPM
HPA:40.6 nTPM
GTEx:50.3 nTPM
FANTOM5:135.8 Scaled Tags Per Million
Pig:56.6 nTPM
Mouse:86.6 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.3
1870 Female, age 42, unknown 42.4
1827 Male, age 72, unknown 40.4
2019 Male, age 18, unknown 39.6
1833 Male, age 53, unknown 38.7
2411 Female, age 72, unknown 38.7
2828 Female, age 72, unknown 38.6
2586 Male, age 75, left hemisphere 37.3
1830 Male, age 51, unknown 36.6
2666 Male, age 74, left hemisphere 36.1
2219 Male, age 76, both hemispheres 35.0
Dorsal raphe nucleus
nTPM: 37.5
2298 Female, age 72, unknown 39.8
2016 Female, age 72, unknown 38.3
1828 Male, age 53, unknown 37.7
2047 Male, age 72, unknown 36.9
2750 Male, age 76, both hemispheres 34.7
Inferior colliculus
nTPM: 40.6
1890 Male, age 53, unknown 41.7
2097 Female, age 72, unknown 41.3
1848 Female, age 42, unknown 41.1
2849 Male, age 72, unknown 38.2
Median raphe nucleus
nTPM: 38.9
2220 Male, age 76, midline 38.9
Pedunculopontine tegmental nucleus
nTPM: 37.7
2334 Male, age 80, both hemispheres 39.6
1921 Female, age 85, both hemispheres 38.3
2338 Male, age 61, both hemispheres 35.3
Periaquaductal grey, anterior
nTPM: 38.5
1947 Male, age 18, unknown 39.5
2502 Female, age 75, unknown 38.5
1795 Male, age 51, unknown 37.7
Periaquaductal grey, dorsal
nTPM: 39.1
1840 Male, age 53, unknown 42.0
1831 Male, age 72, unknown 39.0
2850 Male, age 76, both hemispheres 38.6
2464 Female, age 72, unknown 36.7
Periaquaductal grey, lateral
nTPM: 38.1
2140 Male, age 76, both hemispheres 39.3
2053 Male, age 18, unknown 38.3
2272 Male, age 74, both hemispheres 36.6
Pretectal area
nTPM: 40.2
2007 Male, age 72, unknown 41.8
2667 Female, age 75, unknown 41.6
1944 Female, age 72, unknown 41.5
1817 Female, age 42, unknown 41.2
2273 Male, age 74, both hemispheres 40.8
1816 Male, age 51, unknown 40.6
2316 Male, age 76, right hemisphere 39.9
1815 Male, age 53, unknown 39.5
2224 Female, age 72, unknown 39.0
2407 Male, age 75, both hemispheres 38.3
2825 Male, age 18, unknown 38.1
Red nucleus
nTPM: 39.9
1954 Female, age 42, unknown 42.6
1821 Female, age 72, unknown 42.1
1865 Male, age 51, unknown 42.1
1904 Male, age 53, unknown 41.4
2725 Female, age 75, unknown 41.3
2503 Female, age 72, unknown 41.1
2785 Male, age 18, unknown 40.3
2769 Male, age 72, unknown 39.8
2227 Male, age 72, unknown 39.4
2823 Male, age 76, right hemisphere 38.3
2588 Male, age 74, left hemisphere 36.2
2584 Male, age 75, left hemisphere 34.3
Substantia nigra
nTPM: 40.6
2409 Female, age 72, unknown 44.0
1916 Female, age 42, unknown 42.6
1851 Male, age 51, unknown 42.2
1889 Female, age 72, unknown 42.2
2583 Male, age 75, right hemisphere 41.7
2241 Male, age 72, unknown 40.6
2590 Female, age 75, unknown 39.4
2665 Male, age 74, both hemispheres 38.9
2699 Male, age 18, unknown 38.3
1941 Male, age 53, unknown 36.5
Superior colliculus
nTPM: 38.6
2087 Female, age 72, unknown 41.9
2587 Male, age 74, left hemisphere 40.0
2261 Male, age 18, unknown 39.6
1913 Female, age 42, unknown 38.9
1796 Male, age 53, unknown 38.7
1895 Male, age 76, right hemisphere 38.0
1995 Male, age 72, unknown 38.0
1839 Male, age 51, unknown 37.8
2668 Female, age 75, unknown 37.0
2664 Male, age 75, both hemispheres 36.1
Ventral tegmental area
nTPM: 38.6
1915 Female, age 42, unknown 41.7
2218 Male, age 76, both hemispheres 38.8
2410 Female, age 72, unknown 38.7
1942 Male, age 51, unknown 38.0
2223 Female, age 72, unknown 37.3
2021 Male, age 53, unknown 37.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.3
Samples: 139

Max nTPM: 109.8
Min nTPM: 20.7
Std nTPM: 13.1
Median nTPM: 48.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 109.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 90.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 84.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 82.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 82.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 76.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 73.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 72.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 71.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 71.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 70.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 135.8
FF:10158-103A5 76 years, female 135.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.6
Pig sample Sample description nTPM
Midbrain
nTPM: 56.6
Samples: 4

Max nTPM: 78.2
Min nTPM: 47.2
Sample A Female 78.2
Sample B Female 53.3
Sample C Male 47.2
Sample D Male 47.6
Periaqueductal gray
nTPM: 46.8
Samples: 3

Max nTPM: 50.8
Min nTPM: 43.4
Sample B Female 50.8
Sample C Male 46.3
Sample D Male 43.4
Substantia nigra
nTPM: 49.9
Samples: 4

Max nTPM: 61.1
Min nTPM: 43.5
Sample A Female 61.1
Sample B Female 51.2
Sample C Male 43.9
Sample D Male 43.5
Superior colliculi
nTPM: 52.4
Samples: 4

Max nTPM: 64.4
Min nTPM: 46.2
Sample A Female 64.4
Sample B Female 46.2
Sample C Male 51.8
Sample D Male 47.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 86.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.6
Samples: 4

Max nTPM: 89.6
Min nTPM: 85.1
Sample A Male 89.6
Sample B Male 86.3
Sample C Female 85.1
Sample D Female 85.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
69873648 Antisense, RP_050512_01_F09, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.