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General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene namei
Official gene symbol, which is typically a short form of the gene name, according to HGNC.
Cancer-related genes Disease related genes Enzymes Human disease related genes Metabolic proteins Plasma proteins Potential drug targets
Predicted locationi
All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.
Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).
The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Chromosome
6
Cytoband
q25.3
Chromosome location (bp)
159669069 - 159762529
Number of transcriptsi
Number of protein-coding transcripts from the gene as defined by Ensembl.
The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).
In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl
Description: CATALYTIC AND STRUCTURAL EFFECTS OF AMINO-ACID SUBSTITUTION AT HIS 30 IN HUMAN MANGANESE SUPEROXIDE DISMUTASE: INSERTION OF VAL CGAMMA INTO THE SUBSTRATE ACCESS CHANNEL (X-ray)
The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.
At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.
Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).
The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).
If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.
Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Enzymes ENZYME proteins Oxidoreductases Metabolic proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Urinary system diseases Kidney diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Ezkurdia et al 2014)
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GO:0000303 [response to superoxide] GO:0001315 [age-dependent response to reactive oxygen species] GO:0001836 [release of cytochrome c from mitochondria] GO:0003069 [acetylcholine-mediated vasodilation involved in regulation of systemic arterial blood pressure] GO:0004784 [superoxide dismutase activity] GO:0005515 [protein binding] GO:0005739 [mitochondrion] GO:0005759 [mitochondrial matrix] GO:0006357 [regulation of transcription by RNA polymerase II] GO:0006801 [superoxide metabolic process] GO:0008217 [regulation of blood pressure] GO:0008285 [negative regulation of cell population proliferation] GO:0016491 [oxidoreductase activity] GO:0019430 [removal of superoxide radicals] GO:0030145 [manganese ion binding] GO:0030335 [positive regulation of cell migration] GO:0032364 [oxygen homeostasis] GO:0034599 [cellular response to oxidative stress] GO:0035722 [interleukin-12-mediated signaling pathway] GO:0042802 [identical protein binding] GO:0043524 [negative regulation of neuron apoptotic process] GO:0046872 [metal ion binding] GO:0051289 [protein homotetramerization] GO:0055114 [oxidation-reduction process] GO:0070062 [extracellular exosome] GO:1902176 [negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway] GO:1904706 [negative regulation of vascular associated smooth muscle cell proliferation] GO:1905461 [positive regulation of vascular associated smooth muscle cell apoptotic process] GO:1905932 [positive regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching]
Enzymes ENZYME proteins Oxidoreductases Metabolic proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Urinary system diseases Kidney diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000303 [response to superoxide] GO:0001315 [age-dependent response to reactive oxygen species] GO:0001836 [release of cytochrome c from mitochondria] GO:0003069 [acetylcholine-mediated vasodilation involved in regulation of systemic arterial blood pressure] GO:0004784 [superoxide dismutase activity] GO:0005515 [protein binding] GO:0005739 [mitochondrion] GO:0005759 [mitochondrial matrix] GO:0006357 [regulation of transcription by RNA polymerase II] GO:0006801 [superoxide metabolic process] GO:0008217 [regulation of blood pressure] GO:0008285 [negative regulation of cell population proliferation] GO:0016491 [oxidoreductase activity] GO:0019430 [removal of superoxide radicals] GO:0030145 [manganese ion binding] GO:0030335 [positive regulation of cell migration] GO:0032364 [oxygen homeostasis] GO:0034599 [cellular response to oxidative stress] GO:0035722 [interleukin-12-mediated signaling pathway] GO:0042802 [identical protein binding] GO:0043524 [negative regulation of neuron apoptotic process] GO:0046872 [metal ion binding] GO:0051289 [protein homotetramerization] GO:0055114 [oxidation-reduction process] GO:0070062 [extracellular exosome] GO:1902176 [negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway] GO:1904706 [negative regulation of vascular associated smooth muscle cell proliferation] GO:1905461 [positive regulation of vascular associated smooth muscle cell apoptotic process] GO:1905932 [positive regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching]
Enzymes ENZYME proteins Oxidoreductases Metabolic proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Urinary system diseases Kidney diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000303 [response to superoxide] GO:0001315 [age-dependent response to reactive oxygen species] GO:0001836 [release of cytochrome c from mitochondria] GO:0003069 [acetylcholine-mediated vasodilation involved in regulation of systemic arterial blood pressure] GO:0004784 [superoxide dismutase activity] GO:0005515 [protein binding] GO:0005739 [mitochondrion] GO:0005759 [mitochondrial matrix] GO:0006357 [regulation of transcription by RNA polymerase II] GO:0006801 [superoxide metabolic process] GO:0008217 [regulation of blood pressure] GO:0008285 [negative regulation of cell population proliferation] GO:0016491 [oxidoreductase activity] GO:0019430 [removal of superoxide radicals] GO:0030145 [manganese ion binding] GO:0030335 [positive regulation of cell migration] GO:0032364 [oxygen homeostasis] GO:0034599 [cellular response to oxidative stress] GO:0035722 [interleukin-12-mediated signaling pathway] GO:0042802 [identical protein binding] GO:0043524 [negative regulation of neuron apoptotic process] GO:0046872 [metal ion binding] GO:0051289 [protein homotetramerization] GO:0055114 [oxidation-reduction process] GO:0070062 [extracellular exosome] GO:1902176 [negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway] GO:1904706 [negative regulation of vascular associated smooth muscle cell proliferation] GO:1905461 [positive regulation of vascular associated smooth muscle cell apoptotic process] GO:1905932 [positive regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching]
Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Urinary system diseases Kidney diseases Protein evidence (Ezkurdia et al 2014)
Enzymes ENZYME proteins Oxidoreductases Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Urinary system diseases Kidney diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000303 [response to superoxide] GO:0001315 [age-dependent response to reactive oxygen species] GO:0001836 [release of cytochrome c from mitochondria] GO:0003069 [acetylcholine-mediated vasodilation involved in regulation of systemic arterial blood pressure] GO:0004784 [superoxide dismutase activity] GO:0005515 [protein binding] GO:0005739 [mitochondrion] GO:0005759 [mitochondrial matrix] GO:0006357 [regulation of transcription by RNA polymerase II] GO:0006801 [superoxide metabolic process] GO:0008217 [regulation of blood pressure] GO:0008285 [negative regulation of cell population proliferation] GO:0016491 [oxidoreductase activity] GO:0019430 [removal of superoxide radicals] GO:0030145 [manganese ion binding] GO:0030335 [positive regulation of cell migration] GO:0032364 [oxygen homeostasis] GO:0034599 [cellular response to oxidative stress] GO:0035722 [interleukin-12-mediated signaling pathway] GO:0042802 [identical protein binding] GO:0043524 [negative regulation of neuron apoptotic process] GO:0046872 [metal ion binding] GO:0051289 [protein homotetramerization] GO:0055114 [oxidation-reduction process] GO:0070062 [extracellular exosome] GO:1902176 [negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway] GO:1904706 [negative regulation of vascular associated smooth muscle cell proliferation] GO:1905461 [positive regulation of vascular associated smooth muscle cell apoptotic process] GO:1905932 [positive regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching]
Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Urinary system diseases Kidney diseases Protein evidence (Ezkurdia et al 2014)
Metabolic proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Urinary system diseases Kidney diseases Protein evidence (Ezkurdia et al 2014)
Metabolic proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Urinary system diseases Kidney diseases Protein evidence (Ezkurdia et al 2014)
Enzymes ENZYME proteins Oxidoreductases Metabolic proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Urinary system diseases Kidney diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000303 [response to superoxide] GO:0001315 [age-dependent response to reactive oxygen species] GO:0001666 [response to hypoxia] GO:0001836 [release of cytochrome c from mitochondria] GO:0003069 [acetylcholine-mediated vasodilation involved in regulation of systemic arterial blood pressure] GO:0003677 [DNA binding] GO:0004784 [superoxide dismutase activity] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0005739 [mitochondrion] GO:0005759 [mitochondrial matrix] GO:0006357 [regulation of transcription by RNA polymerase II] GO:0006801 [superoxide metabolic process] GO:0006979 [response to oxidative stress] GO:0007568 [aging] GO:0008217 [regulation of blood pressure] GO:0008285 [negative regulation of cell population proliferation] GO:0009314 [response to radiation] GO:0009409 [response to cold] GO:0010042 [response to manganese ion] GO:0010043 [response to zinc ion] GO:0010269 [response to selenium ion] GO:0010729 [positive regulation of hydrogen peroxide biosynthetic process] GO:0014823 [response to activity] GO:0016491 [oxidoreductase activity] GO:0019430 [removal of superoxide radicals] GO:0019825 [oxygen binding] GO:0019899 [enzyme binding] GO:0030145 [manganese ion binding] GO:0030335 [positive regulation of cell migration] GO:0031667 [response to nutrient levels] GO:0032364 [oxygen homeostasis] GO:0032496 [response to lipopolysaccharide] GO:0033591 [response to L-ascorbic acid] GO:0034021 [response to silicon dioxide] GO:0034599 [cellular response to oxidative stress] GO:0035722 [interleukin-12-mediated signaling pathway] GO:0035900 [response to isolation stress] GO:0035902 [response to immobilization stress] GO:0042493 [response to drug] GO:0042542 [response to hydrogen peroxide] GO:0042645 [mitochondrial nucleoid] GO:0042743 [hydrogen peroxide metabolic process] GO:0042802 [identical protein binding] GO:0043066 [negative regulation of apoptotic process] GO:0043524 [negative regulation of neuron apoptotic process] GO:0046686 [response to cadmium ion] GO:0046872 [metal ion binding] GO:0050665 [hydrogen peroxide biosynthetic process] GO:0051289 [protein homotetramerization] GO:0051602 [response to electrical stimulus] GO:0055114 [oxidation-reduction process] GO:0070062 [extracellular exosome] GO:0071000 [response to magnetism] GO:0071361 [cellular response to ethanol] GO:1902176 [negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway] GO:1902631 [negative regulation of membrane hyperpolarization] GO:1904706 [negative regulation of vascular associated smooth muscle cell proliferation] GO:1905461 [positive regulation of vascular associated smooth muscle cell apoptotic process] GO:1905932 [positive regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching]
Metabolic proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Urinary system diseases Kidney diseases Protein evidence (Ezkurdia et al 2014)
Metabolic proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Urinary system diseases Kidney diseases Protein evidence (Ezkurdia et al 2014)
The Human Protein Atlas project is funded
