MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1406.0 nTPM
HPA:1406.0 nTPM
GTEx:1542.7 nTPM
FANTOM5:527.0 Scaled Tags Per Million
Pig:330.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1406.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1371.2
2666 Male, age 74, left hemisphere 1407.8
2411 Female, age 72, unknown 1392.5
1870 Female, age 42, unknown 1385.4
2828 Female, age 72, unknown 1381.4
2586 Male, age 75, left hemisphere 1378.2
1833 Male, age 53, unknown 1360.2
1827 Male, age 72, unknown 1358.3
1830 Male, age 51, unknown 1356.6
2019 Male, age 18, unknown 1353.1
2219 Male, age 76, both hemispheres 1338.6
Dorsal raphe nucleus
nTPM: 1359.7
2016 Female, age 72, unknown 1372.4
2298 Female, age 72, unknown 1372.3
2750 Male, age 76, both hemispheres 1365.8
1828 Male, age 53, unknown 1355.4
2047 Male, age 72, unknown 1332.7
Inferior colliculus
nTPM: 1348.4
1890 Male, age 53, unknown 1374.4
2097 Female, age 72, unknown 1345.7
1848 Female, age 42, unknown 1340.5
2849 Male, age 72, unknown 1333.0
Median raphe nucleus
nTPM: 1344.9
2220 Male, age 76, midline 1344.9
Pedunculopontine tegmental nucleus
nTPM: 1376.9
2334 Male, age 80, both hemispheres 1403.1
2338 Male, age 61, both hemispheres 1390.4
1921 Female, age 85, both hemispheres 1337.2
Periaquaductal grey, anterior
nTPM: 1371.2
2502 Female, age 75, unknown 1402.9
1795 Male, age 51, unknown 1356.6
1947 Male, age 18, unknown 1354.1
Periaquaductal grey, dorsal
nTPM: 1361.5
1831 Male, age 72, unknown 1374.8
1840 Male, age 53, unknown 1368.3
2464 Female, age 72, unknown 1355.6
2850 Male, age 76, both hemispheres 1347.2
Periaquaductal grey, lateral
nTPM: 1346.6
2053 Male, age 18, unknown 1392.3
2140 Male, age 76, both hemispheres 1340.2
2272 Male, age 74, both hemispheres 1307.4
Pretectal area
nTPM: 1361.7
1815 Male, age 53, unknown 1388.2
1817 Female, age 42, unknown 1379.2
2316 Male, age 76, right hemisphere 1372.1
2007 Male, age 72, unknown 1370.6
1816 Male, age 51, unknown 1370.2
2407 Male, age 75, both hemispheres 1361.3
2667 Female, age 75, unknown 1358.2
1944 Female, age 72, unknown 1354.0
2825 Male, age 18, unknown 1352.9
2224 Female, age 72, unknown 1351.0
2273 Male, age 74, both hemispheres 1320.5
Red nucleus
nTPM: 1403.2
2503 Female, age 72, unknown 1480.0
1865 Male, age 51, unknown 1421.4
1821 Female, age 72, unknown 1421.3
1904 Male, age 53, unknown 1412.3
2588 Male, age 74, left hemisphere 1407.7
2725 Female, age 75, unknown 1403.7
2769 Male, age 72, unknown 1399.3
2584 Male, age 75, left hemisphere 1395.7
2227 Male, age 72, unknown 1387.8
2785 Male, age 18, unknown 1375.7
2823 Male, age 76, right hemisphere 1371.2
1954 Female, age 42, unknown 1362.7
Substantia nigra
nTPM: 1406.0
1851 Male, age 51, unknown 1473.2
2699 Male, age 18, unknown 1455.7
2409 Female, age 72, unknown 1435.0
2241 Male, age 72, unknown 1418.3
1916 Female, age 42, unknown 1413.7
2665 Male, age 74, both hemispheres 1400.9
2590 Female, age 75, unknown 1379.0
1889 Female, age 72, unknown 1376.2
2583 Male, age 75, right hemisphere 1358.6
1941 Male, age 53, unknown 1349.3
Superior colliculus
nTPM: 1382.6
2587 Male, age 74, left hemisphere 1430.9
1995 Male, age 72, unknown 1424.9
1913 Female, age 42, unknown 1421.9
1796 Male, age 53, unknown 1376.0
2668 Female, age 75, unknown 1370.9
2087 Female, age 72, unknown 1365.3
1839 Male, age 51, unknown 1363.2
2664 Male, age 75, both hemispheres 1359.3
1895 Male, age 76, right hemisphere 1358.3
2261 Male, age 18, unknown 1355.5
Ventral tegmental area
nTPM: 1391.4
1915 Female, age 42, unknown 1425.8
2410 Female, age 72, unknown 1409.3
2223 Female, age 72, unknown 1404.8
2021 Male, age 53, unknown 1386.8
2218 Male, age 76, both hemispheres 1364.0
1942 Male, age 51, unknown 1357.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1542.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1542.7
Samples: 139

Max nTPM: 6015.3
Min nTPM: 464.4
Std nTPM: 708.7
Median nTPM: 1427.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6015.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4051.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3990.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3265.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2834.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2783.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2726.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2620.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2544.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2431.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2393.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 527.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 527.0
FF:10158-103A5 76 years, female 527.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 330.5
Pig sample Sample description nTPM
Midbrain
nTPM: 300.9
Samples: 4

Max nTPM: 448.6
Min nTPM: 203.0
Sample A Female 448.6
Sample B Female 340.6
Sample C Male 211.5
Sample D Male 203.0
Periaqueductal gray
nTPM: 242.1
Samples: 3

Max nTPM: 276.4
Min nTPM: 215.6
Sample B Female 276.4
Sample C Male 234.3
Sample D Male 215.6
Substantia nigra
nTPM: 330.5
Samples: 4

Max nTPM: 424.7
Min nTPM: 270.7
Sample A Female 424.7
Sample B Female 350.6
Sample C Male 270.7
Sample D Male 276.1
Superior colliculi
nTPM: 318.1
Samples: 4

Max nTPM: 361.9
Min nTPM: 266.6
Sample A Female 361.9
Sample B Female 351.3
Sample C Male 292.6
Sample D Male 266.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.