MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:219.8 nTPM
HPA:219.8 nTPM
GTEx:226.8 nTPM
FANTOM5:192.1 Scaled Tags Per Million
Pig:155.9 nTPM
Mouse:177.3 nTPM
Allen mouse:14.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 219.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 204.1
2019 Male, age 18, unknown 220.1
1870 Female, age 42, unknown 208.7
2411 Female, age 72, unknown 208.1
1827 Male, age 72, unknown 207.3
1833 Male, age 53, unknown 204.0
1830 Male, age 51, unknown 201.0
2586 Male, age 75, left hemisphere 199.7
2666 Male, age 74, left hemisphere 199.4
2828 Female, age 72, unknown 197.6
2219 Male, age 76, both hemispheres 195.6
Dorsal raphe nucleus
nTPM: 207.0
2750 Male, age 76, both hemispheres 214.7
2298 Female, age 72, unknown 211.5
1828 Male, age 53, unknown 204.9
2047 Male, age 72, unknown 203.5
2016 Female, age 72, unknown 200.1
Inferior colliculus
nTPM: 204.2
2097 Female, age 72, unknown 211.4
1890 Male, age 53, unknown 203.2
2849 Male, age 72, unknown 201.6
1848 Female, age 42, unknown 200.7
Median raphe nucleus
nTPM: 214.1
2220 Male, age 76, midline 214.1
Pedunculopontine tegmental nucleus
nTPM: 212.0
2334 Male, age 80, both hemispheres 215.7
2338 Male, age 61, both hemispheres 215.5
1921 Female, age 85, both hemispheres 204.7
Periaquaductal grey, anterior
nTPM: 204.4
2502 Female, age 75, unknown 207.6
1795 Male, age 51, unknown 207.1
1947 Male, age 18, unknown 198.5
Periaquaductal grey, dorsal
nTPM: 208.5
2850 Male, age 76, both hemispheres 217.6
1840 Male, age 53, unknown 208.3
2464 Female, age 72, unknown 204.8
1831 Male, age 72, unknown 203.2
Periaquaductal grey, lateral
nTPM: 208.3
2272 Male, age 74, both hemispheres 215.5
2140 Male, age 76, both hemispheres 205.2
2053 Male, age 18, unknown 204.3
Pretectal area
nTPM: 219.8
1944 Female, age 72, unknown 240.0
1816 Male, age 51, unknown 237.5
1817 Female, age 42, unknown 236.0
1815 Male, age 53, unknown 229.3
2007 Male, age 72, unknown 229.0
2273 Male, age 74, both hemispheres 215.8
2224 Female, age 72, unknown 214.5
2667 Female, age 75, unknown 212.3
2407 Male, age 75, both hemispheres 202.0
2825 Male, age 18, unknown 200.8
2316 Male, age 76, right hemisphere 200.2
Red nucleus
nTPM: 202.7
2785 Male, age 18, unknown 215.0
1821 Female, age 72, unknown 212.5
2823 Male, age 76, right hemisphere 206.6
1904 Male, age 53, unknown 204.7
2503 Female, age 72, unknown 204.3
2725 Female, age 75, unknown 204.1
1865 Male, age 51, unknown 202.7
1954 Female, age 42, unknown 202.0
2769 Male, age 72, unknown 198.8
2227 Male, age 72, unknown 197.8
2588 Male, age 74, left hemisphere 194.2
2584 Male, age 75, left hemisphere 189.3
Substantia nigra
nTPM: 207.0
1889 Female, age 72, unknown 224.6
2409 Female, age 72, unknown 209.6
2241 Male, age 72, unknown 209.5
1851 Male, age 51, unknown 209.2
2590 Female, age 75, unknown 206.1
1941 Male, age 53, unknown 204.0
2665 Male, age 74, both hemispheres 203.1
1916 Female, age 42, unknown 202.4
2583 Male, age 75, right hemisphere 201.1
2699 Male, age 18, unknown 200.0
Superior colliculus
nTPM: 212.1
2087 Female, age 72, unknown 219.5
1913 Female, age 42, unknown 219.4
2261 Male, age 18, unknown 218.9
2587 Male, age 74, left hemisphere 218.0
1995 Male, age 72, unknown 217.4
2668 Female, age 75, unknown 211.7
1796 Male, age 53, unknown 209.1
1895 Male, age 76, right hemisphere 204.9
1839 Male, age 51, unknown 202.2
2664 Male, age 75, both hemispheres 199.6
Ventral tegmental area
nTPM: 204.5
2410 Female, age 72, unknown 214.2
2223 Female, age 72, unknown 209.9
2218 Male, age 76, both hemispheres 204.4
2021 Male, age 53, unknown 200.7
1915 Female, age 42, unknown 200.4
1942 Male, age 51, unknown 197.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 226.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 226.8
Samples: 139

Max nTPM: 513.9
Min nTPM: 139.8
Std nTPM: 63.7
Median nTPM: 210.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 513.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 511.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 464.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 368.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 364.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 358.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 341.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 339.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 334.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 333.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 332.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 192.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 192.1
FF:10158-103A5 76 years, female 192.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 155.9
Pig sample Sample description nTPM
Midbrain
nTPM: 156.0
Samples: 4

Max nTPM: 197.9
Min nTPM: 120.0
Sample A Female 197.9
Sample B Female 150.7
Sample C Male 155.2
Sample D Male 120.0
Periaqueductal gray
nTPM: 136.2
Samples: 3

Max nTPM: 154.2
Min nTPM: 124.1
Sample B Female 130.2
Sample C Male 154.2
Sample D Male 124.1
Substantia nigra
nTPM: 142.6
Samples: 4

Max nTPM: 176.9
Min nTPM: 123.3
Sample A Female 176.9
Sample B Female 126.8
Sample C Male 143.2
Sample D Male 123.3
Superior colliculi
nTPM: 150.2
Samples: 4

Max nTPM: 179.8
Min nTPM: 122.9
Sample A Female 163.8
Sample B Female 122.9
Sample C Male 179.8
Sample D Male 134.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 177.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 177.3
Samples: 4

Max nTPM: 183.0
Min nTPM: 171.3
Sample A Male 174.7
Sample B Male 171.3
Sample C Female 180.3
Sample D Female 183.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
69885624 Antisense, RP_050512_03_A07, Mouse strain C57BL/6J (56 days, male) 14.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.