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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:221.1 nTPM
HPA:221.1 nTPM
GTEx:208.7 nTPM
FANTOM5:171.2 Scaled Tags Per Million
Pig:151.9 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 221.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 204.7
1981 Female, age 72, midline 220.1
2048 Male, age 55, midline 209.7
2194 Female, age 79, both hemispheres 200.2
2565 Male, age 75, midline 198.8
2816 Male, age 47, midline 194.8
Cervical spinal cord, dorsal horn
nTPM: 221.1
2296 Male, age 66, both hemispheres 237.3
2069 Male, age 47, both hemispheres 228.2
2173 Female, age 72, unknown 227.0
1877 Male, age 55, unknown 216.9
2297 Male, age 75, both hemispheres 211.9
2721 Male, age 90, both hemispheres 205.5
Cervical spinal cord, ventral horn
nTPM: 211.9
2098 Female, age 72, unknown 233.0
2480 Male, age 75, both hemispheres 219.8
2809 Male, age 90, both hemispheres 214.6
2295 Male, age 66, both hemispheres 208.9
2068 Male, age 55, unknown 202.3
2820 Female, age 79, both hemispheres 192.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 208.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 208.7
Samples: 159

Max nTPM: 571.2
Min nTPM: 128.8
Std nTPM: 54.3
Median nTPM: 199.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 571.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 442.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 352.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 344.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 330.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 329.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 311.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 309.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 308.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 279.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 277.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 274.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 272.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 272.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 271.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 267.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 265.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 263.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 258.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 257.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 255.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 252.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 251.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 249.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 249.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 248.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 247.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 245.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 238.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 233.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 233.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 232.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 232.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 231.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 228.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 225.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 225.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 224.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 223.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 223.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 223.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 223.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 222.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 222.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 222.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 221.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 221.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 219.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 218.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 218.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 218.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 217.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 217.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 217.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 216.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 215.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 215.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 214.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 213.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 213.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 213.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 213.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 212.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 211.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 210.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 209.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 209.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 208.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 207.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 207.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 206.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 206.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 206.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 204.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 204.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 204.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 200.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 200.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 200.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 199.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 199.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 198.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 198.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 197.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 195.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 195.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 194.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 194.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 194.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 193.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 193.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 193.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 191.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 191.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 191.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 191.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 188.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 187.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 187.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 187.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 186.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 185.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 185.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 185.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 184.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 184.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 183.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 183.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 183.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 182.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 180.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 179.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 179.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 177.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 176.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 175.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 173.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 173.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 172.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 171.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 170.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 170.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 169.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 169.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 167.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 167.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 167.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 166.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 166.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 166.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 166.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 165.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 165.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 165.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 164.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 163.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 163.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 163.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 163.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 163.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 162.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 161.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 161.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 160.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 159.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 157.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 157.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 156.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 156.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 156.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 152.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 151.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 151.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 142.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 141.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 140.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 139.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 133.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 128.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 171.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 171.2
FF:10181-103D1 60 years, female 182.0
FF:10159-103A6 76 years, female 160.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 151.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 136.3
Samples: 4

Max nTPM: 147.1
Min nTPM: 129.6
Sample A Female 130.5
Sample B Female 147.1
Sample C Male 137.9
Sample D Male 129.6
Ventral spinal cord
nTPM: 151.9
Samples: 4

Max nTPM: 159.6
Min nTPM: 138.7
Sample A Female 138.7
Sample B Female 158.8
Sample C Male 150.5
Sample D Male 159.6

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