MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:158.3 nTPM
HPA:158.3 nTPM
GTEx:190.5 nTPM
FANTOM5:144.4 Scaled Tags Per Million
Pig:64.6 nTPM
Mouse:61.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 158.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.3
2411 Female, age 72, unknown 165.3
1827 Male, age 72, unknown 160.5
2019 Male, age 18, unknown 158.1
2828 Female, age 72, unknown 157.4
2666 Male, age 74, left hemisphere 155.9
1870 Female, age 42, unknown 153.9
1833 Male, age 53, unknown 149.9
2219 Male, age 76, both hemispheres 149.7
1830 Male, age 51, unknown 148.5
2586 Male, age 75, left hemisphere 143.9
Dorsal raphe nucleus
nTPM: 152.0
2298 Female, age 72, unknown 162.7
2750 Male, age 76, both hemispheres 153.4
1828 Male, age 53, unknown 152.2
2047 Male, age 72, unknown 147.6
2016 Female, age 72, unknown 144.3
Inferior colliculus
nTPM: 148.0
2097 Female, age 72, unknown 157.8
1848 Female, age 42, unknown 146.6
2849 Male, age 72, unknown 145.1
1890 Male, age 53, unknown 142.6
Median raphe nucleus
nTPM: 158.3
2220 Male, age 76, midline 158.3
Pedunculopontine tegmental nucleus
nTPM: 155.0
2334 Male, age 80, both hemispheres 158.8
2338 Male, age 61, both hemispheres 155.0
1921 Female, age 85, both hemispheres 151.3
Periaquaductal grey, anterior
nTPM: 152.5
1795 Male, age 51, unknown 155.2
1947 Male, age 18, unknown 154.2
2502 Female, age 75, unknown 148.2
Periaquaductal grey, dorsal
nTPM: 145.4
1831 Male, age 72, unknown 149.8
2850 Male, age 76, both hemispheres 145.1
2464 Female, age 72, unknown 144.1
1840 Male, age 53, unknown 142.6
Periaquaductal grey, lateral
nTPM: 151.4
2272 Male, age 74, both hemispheres 161.2
2053 Male, age 18, unknown 149.1
2140 Male, age 76, both hemispheres 144.0
Pretectal area
nTPM: 155.9
1817 Female, age 42, unknown 167.0
1815 Male, age 53, unknown 162.6
1816 Male, age 51, unknown 162.0
1944 Female, age 72, unknown 160.6
2007 Male, age 72, unknown 160.0
2273 Male, age 74, both hemispheres 156.0
2224 Female, age 72, unknown 155.9
2667 Female, age 75, unknown 155.3
2407 Male, age 75, both hemispheres 148.1
2825 Male, age 18, unknown 146.7
2316 Male, age 76, right hemisphere 141.3
Red nucleus
nTPM: 154.7
1821 Female, age 72, unknown 163.6
1954 Female, age 42, unknown 158.9
2785 Male, age 18, unknown 158.1
1904 Male, age 53, unknown 157.6
2503 Female, age 72, unknown 156.7
1865 Male, age 51, unknown 156.4
2227 Male, age 72, unknown 155.4
2769 Male, age 72, unknown 154.8
2725 Female, age 75, unknown 153.8
2584 Male, age 75, left hemisphere 149.0
2823 Male, age 76, right hemisphere 147.4
2588 Male, age 74, left hemisphere 144.8
Substantia nigra
nTPM: 151.6
1889 Female, age 72, unknown 159.4
1916 Female, age 42, unknown 158.6
1851 Male, age 51, unknown 155.5
1941 Male, age 53, unknown 155.4
2583 Male, age 75, right hemisphere 151.2
2409 Female, age 72, unknown 149.9
2590 Female, age 75, unknown 148.5
2699 Male, age 18, unknown 148.2
2241 Male, age 72, unknown 145.5
2665 Male, age 74, both hemispheres 144.2
Superior colliculus
nTPM: 152.8
2668 Female, age 75, unknown 161.2
2087 Female, age 72, unknown 158.6
2261 Male, age 18, unknown 157.7
2587 Male, age 74, left hemisphere 157.2
1796 Male, age 53, unknown 156.6
1913 Female, age 42, unknown 152.9
1995 Male, age 72, unknown 149.5
1839 Male, age 51, unknown 149.2
1895 Male, age 76, right hemisphere 149.2
2664 Male, age 75, both hemispheres 136.3
Ventral tegmental area
nTPM: 154.9
2410 Female, age 72, unknown 163.2
2218 Male, age 76, both hemispheres 157.7
1915 Female, age 42, unknown 155.3
2223 Female, age 72, unknown 154.2
2021 Male, age 53, unknown 150.1
1942 Male, age 51, unknown 149.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 190.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 190.5
Samples: 139

Max nTPM: 361.5
Min nTPM: 109.8
Std nTPM: 42.6
Median nTPM: 184.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 361.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 331.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 313.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 305.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 287.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 284.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 271.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 266.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 260.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 257.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 255.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 144.4
FF:10158-103A5 76 years, female 144.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.6
Pig sample Sample description nTPM
Midbrain
nTPM: 60.8
Samples: 4

Max nTPM: 81.9
Min nTPM: 47.9
Sample A Female 81.9
Sample B Female 54.5
Sample C Male 58.8
Sample D Male 47.9
Periaqueductal gray
nTPM: 42.6
Samples: 3

Max nTPM: 47.2
Min nTPM: 39.5
Sample B Female 39.5
Sample C Male 47.2
Sample D Male 41.2
Substantia nigra
nTPM: 57.9
Samples: 4

Max nTPM: 73.1
Min nTPM: 45.4
Sample A Female 73.1
Sample B Female 45.4
Sample C Male 58.7
Sample D Male 54.3
Superior colliculi
nTPM: 64.6
Samples: 4

Max nTPM: 76.6
Min nTPM: 53.3
Sample A Female 76.6
Sample B Female 61.6
Sample C Male 66.8
Sample D Male 53.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 65.5
Min nTPM: 57.0
Sample A Male 65.5
Sample B Male 57.0
Sample C Female 59.8
Sample D Female 63.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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