MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:82.5 nTPM
HPA:82.5 nTPM
GTEx:49.4 nTPM
FANTOM5:51.0 Scaled Tags Per Million
Pig:35.5 nTPM
Mouse:18.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.1
2586 Male, age 75, left hemisphere 93.5
2666 Male, age 74, left hemisphere 85.6
2019 Male, age 18, unknown 82.5
2828 Female, age 72, unknown 82.5
1833 Male, age 53, unknown 79.2
1870 Female, age 42, unknown 79.0
2411 Female, age 72, unknown 79.0
1830 Male, age 51, unknown 78.1
1827 Male, age 72, unknown 77.5
2219 Male, age 76, both hemispheres 74.3
Dorsal raphe nucleus
nTPM: 81.0
2047 Male, age 72, unknown 85.8
2298 Female, age 72, unknown 81.6
1828 Male, age 53, unknown 80.2
2750 Male, age 76, both hemispheres 79.2
2016 Female, age 72, unknown 78.4
Inferior colliculus
nTPM: 77.1
1890 Male, age 53, unknown 79.0
2097 Female, age 72, unknown 76.8
2849 Male, age 72, unknown 76.5
1848 Female, age 42, unknown 76.3
Median raphe nucleus
nTPM: 80.7
2220 Male, age 76, midline 80.7
Pedunculopontine tegmental nucleus
nTPM: 76.2
2334 Male, age 80, both hemispheres 78.6
1921 Female, age 85, both hemispheres 76.0
2338 Male, age 61, both hemispheres 73.9
Periaquaductal grey, anterior
nTPM: 78.7
1795 Male, age 51, unknown 79.2
2502 Female, age 75, unknown 78.8
1947 Male, age 18, unknown 78.2
Periaquaductal grey, dorsal
nTPM: 79.2
2850 Male, age 76, both hemispheres 82.0
1831 Male, age 72, unknown 78.8
1840 Male, age 53, unknown 78.3
2464 Female, age 72, unknown 77.7
Periaquaductal grey, lateral
nTPM: 76.5
2140 Male, age 76, both hemispheres 78.3
2053 Male, age 18, unknown 76.0
2272 Male, age 74, both hemispheres 75.2
Pretectal area
nTPM: 79.1
2007 Male, age 72, unknown 83.1
2667 Female, age 75, unknown 82.8
1817 Female, age 42, unknown 82.2
1815 Male, age 53, unknown 81.6
2825 Male, age 18, unknown 78.7
2407 Male, age 75, both hemispheres 78.5
1816 Male, age 51, unknown 77.8
2316 Male, age 76, right hemisphere 77.8
2224 Female, age 72, unknown 76.8
1944 Female, age 72, unknown 76.1
2273 Male, age 74, both hemispheres 75.0
Red nucleus
nTPM: 80.8
2584 Male, age 75, left hemisphere 84.4
2785 Male, age 18, unknown 82.5
1904 Male, age 53, unknown 81.9
2769 Male, age 72, unknown 81.5
1954 Female, age 42, unknown 81.4
2588 Male, age 74, left hemisphere 81.2
1865 Male, age 51, unknown 80.8
1821 Female, age 72, unknown 80.6
2823 Male, age 76, right hemisphere 79.9
2227 Male, age 72, unknown 79.6
2503 Female, age 72, unknown 78.6
2725 Female, age 75, unknown 77.0
Substantia nigra
nTPM: 82.5
2665 Male, age 74, both hemispheres 91.2
1851 Male, age 51, unknown 88.0
1916 Female, age 42, unknown 87.4
2699 Male, age 18, unknown 83.6
2583 Male, age 75, right hemisphere 82.6
2241 Male, age 72, unknown 79.9
1941 Male, age 53, unknown 78.6
2409 Female, age 72, unknown 78.6
1889 Female, age 72, unknown 78.5
2590 Female, age 75, unknown 76.8
Superior colliculus
nTPM: 79.7
2664 Male, age 75, both hemispheres 90.2
2668 Female, age 75, unknown 85.4
2587 Male, age 74, left hemisphere 80.9
1796 Male, age 53, unknown 79.0
1839 Male, age 51, unknown 78.4
1995 Male, age 72, unknown 78.2
1895 Male, age 76, right hemisphere 77.3
2261 Male, age 18, unknown 76.6
2087 Female, age 72, unknown 76.0
1913 Female, age 42, unknown 75.5
Ventral tegmental area
nTPM: 81.5
1915 Female, age 42, unknown 83.9
2223 Female, age 72, unknown 83.1
2021 Male, age 53, unknown 82.8
2410 Female, age 72, unknown 81.9
1942 Male, age 51, unknown 80.8
2218 Male, age 76, both hemispheres 76.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.4
Samples: 139

Max nTPM: 170.9
Min nTPM: 28.7
Std nTPM: 19.0
Median nTPM: 44.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 170.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 118.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 117.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 96.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 93.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 93.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 88.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 87.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 79.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 77.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 73.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.0
FF:10158-103A5 76 years, female 51.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.5
Pig sample Sample description nTPM
Midbrain
nTPM: 35.5
Samples: 4

Max nTPM: 59.0
Min nTPM: 24.9
Sample A Female 59.0
Sample B Female 31.3
Sample C Male 26.7
Sample D Male 24.9
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 26.4
Min nTPM: 22.7
Sample B Female 26.4
Sample C Male 25.0
Sample D Male 22.7
Substantia nigra
nTPM: 32.9
Samples: 4

Max nTPM: 38.1
Min nTPM: 28.6
Sample A Female 38.1
Sample B Female 28.6
Sample C Male 29.7
Sample D Male 35.0
Superior colliculi
nTPM: 34.0
Samples: 4

Max nTPM: 38.8
Min nTPM: 30.1
Sample A Female 38.8
Sample B Female 35.1
Sample C Male 30.1
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.4
Samples: 4

Max nTPM: 20.1
Min nTPM: 17.4
Sample A Male 20.1
Sample B Male 18.3
Sample C Female 17.7
Sample D Female 17.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68191468 Antisense, RP_041129_01_C04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.