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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Medium
Photoreceptor cells: Medium
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:466.0 nTPM
GTEx:466.0 nTPM
FANTOM5:74.6 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:1799.9 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA055479
Pigment epithelial cells Not detected
Photoreceptor cells Medium
Limiting membrane Not detected
Outer plexiform layer Medium
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 466.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 466.0
Samples: 105

Max nTPM: 883.3
Min nTPM: 155.0
Std nTPM: 143.5
Median nTPM:
218_1 71 years, female 883.3
237_1 82 years, male 786.5
384_1 83 years, male 754.3
347_1 72 years, male 754.0
375_1 74 years, female 738.6
389_1 86 years, female 736.7
319_1 81 years, male 725.6
425_1 59 years, female 704.6
163_1 78 years, male 703.9
321_1 62 years, female 676.4
447_1 81 years, male 673.4
352_1 62 years, male 661.3
6_1 73 years, female 630.0
350_1 84 years, female 627.0
355_1 70 years, female 624.9
322_1 76 years, male 622.5
386_1 76 years, male 619.6
246_1 77 years, male 619.4
243_1 75 years, male 616.0
35_1 74 years, female 601.6
307_1 66 years, female 600.9
394_1 75 years, female 597.8
2_1 77 years, female 593.6
526_1 61 years, male 556.0
354_1 81 years, female 551.2
172_1 72 years, female 548.5
379_1 60 years, male 544.8
173_1 67 years, male 543.6
316_1 62 years, male 541.5
293_1 68 years, female 537.9
480_1 63 years, male 535.8
377_1 82 years, female 535.7
406_1 79 years, male 532.8
468_1 89 years, male 522.4
42_1 85 years, male 519.6
503_1 68 years, male 517.3
217_1 76 years, male 515.9
318_1 68 years, male 509.1
126_1 63 years, male 506.6
251_1 78 years, male 504.5
351_1 91 years, male 500.1
405_1 91 years, male 498.8
189_1 76 years, male 492.3
348_1 84 years, male 475.6
254_1 77 years, female 474.1
404_1 82 years, female 464.1
349_1 83 years, male 458.3
153_1 70 years, female 456.5
517_1 88 years, male 456.0
229_1 69 years, female 455.7
4_1 88 years, female 449.8
115_1 83 years, male 443.2
99_1 64 years, male 442.5
177_1 74 years, male 441.5
317_1 60 years, male 440.7
291_1 76 years, male 440.3
356_1 87 years, female 440.0
9_1 66 years, female 437.7
137_1 83 years, male 433.0
117_1 61 years, male 432.8
292_1 71 years, male 430.6
265_1 87 years, male 426.1
266_1 85 years, male 425.4
518_1 75 years, female 424.4
320_1 89 years, female 423.8
335_1 73 years, female 417.8
41_1 94 years, female 413.2
376_1 75 years, female 403.6
311_1 78 years, male 403.2
145_1 84 years, male 396.2
396_1 62 years, male 393.4
495_1 57 years, female 384.6
286_1 68 years, female 382.9
162_1 79 years, female 380.8
452_1 88 years, female 377.2
18_1 88 years, male 375.6
313_1 79 years, female 375.3
139_1 64 years, female 369.4
17_1 71 years, male 366.9
414_1 84 years, female 361.0
353_1 82 years, female 358.5
120_1 70 years, female 355.4
119_1 70 years, female 352.3
295_1 61 years, female 344.2
264_1 73 years, female 342.3
490_1 67 years, female 340.8
89_1 63 years, male 333.3
314_1 67 years, male 319.0
109_1 81 years, female 316.2
43_1 64 years, female 316.0
324_1 76 years, male 314.5
81_1 67 years, male 313.7
315_1 62 years, female 307.7
499_1 55 years, female 302.8
415_1 77 years, female 301.3
142_1 61 years, female 301.1
506_1 65 years, male 281.5
466_1 57 years, female 278.3
32_1 67 years, male 277.5
288_1 66 years, female 239.1
149_1 88 years, male 224.7
491_1 89 years, female 219.8
413_1 59 years, female 203.3
308_1 70 years, female 194.7
501_1 88 years, male 155.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 74.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 74.6
FF:10030-101E3 24-65 years, mixed 74.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 59.8
Pig sample Sample description nTPM
Retina
nTPM: 59.8
Samples: 4

Max nTPM: 90.9
Min nTPM: 38.3
Sample A Female 39.6
Sample B Female 70.2
Sample C Male 90.9
Sample D Male 38.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1799.9
Mouse sample Sample description nTPM
Retina
nTPM: 1799.9
Samples: 4

Max nTPM: 2064.2
Min nTPM: 1521.3
Sample A Male 1790.1
Sample B Male 1823.9
Sample C Female 2064.2
Sample D Female 1521.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.