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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:641.4 nTPM
GTEx:641.4 nTPM
FANTOM5:175.9 Scaled Tags Per Million
Pig:814.3 nTPM
Mouse:4745.9 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA029458
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 641.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 641.4
Samples: 105

Max nTPM: 1154.2
Min nTPM: 262.2
Std nTPM: 167.5
Median nTPM:
352_1 62 years, male 1154.2
172_1 72 years, female 1030.7
237_1 82 years, male 982.1
375_1 74 years, female 967.8
386_1 76 years, male 953.6
355_1 70 years, female 941.8
347_1 72 years, male 927.6
389_1 86 years, female 904.8
6_1 73 years, female 888.0
218_1 71 years, female 883.7
447_1 81 years, male 882.1
316_1 62 years, male 862.5
246_1 77 years, male 825.4
229_1 69 years, female 816.3
379_1 60 years, male 806.9
425_1 59 years, female 795.6
354_1 81 years, female 792.8
189_1 76 years, male 790.3
321_1 62 years, female 782.8
350_1 84 years, female 778.3
286_1 68 years, female 759.6
526_1 61 years, male 758.8
243_1 75 years, male 754.9
163_1 78 years, male 754.0
324_1 76 years, male 753.7
217_1 76 years, male 749.2
319_1 81 years, male 741.6
292_1 71 years, male 740.9
335_1 73 years, female 740.9
35_1 74 years, female 731.3
126_1 63 years, male 728.2
405_1 91 years, male 725.0
9_1 66 years, female 724.4
251_1 78 years, male 724.3
480_1 63 years, male 713.5
177_1 74 years, male 711.0
115_1 83 years, male 698.4
468_1 89 years, male 688.7
394_1 75 years, female 686.5
99_1 64 years, male 682.0
404_1 82 years, female 676.4
153_1 70 years, female 673.8
265_1 87 years, male 668.0
490_1 67 years, female 660.1
466_1 57 years, female 654.2
348_1 84 years, male 653.8
81_1 67 years, male 653.4
376_1 75 years, female 650.6
322_1 76 years, male 644.8
503_1 68 years, male 644.5
415_1 77 years, female 642.4
349_1 83 years, male 641.1
291_1 76 years, male 639.8
318_1 68 years, male 639.4
43_1 64 years, female 634.9
117_1 61 years, male 634.8
307_1 66 years, female 634.1
377_1 82 years, female 633.7
356_1 87 years, female 630.0
406_1 79 years, male 627.2
32_1 67 years, male 621.1
384_1 83 years, male 614.0
396_1 62 years, male 608.1
320_1 89 years, female 601.3
518_1 75 years, female 600.0
517_1 88 years, male 595.2
353_1 82 years, female 593.9
266_1 85 years, male 570.3
293_1 68 years, female 569.1
162_1 79 years, female 568.3
499_1 55 years, female 564.8
414_1 84 years, female 563.3
173_1 67 years, male 561.2
145_1 84 years, male 559.9
137_1 83 years, male 556.1
142_1 61 years, female 553.7
18_1 88 years, male 549.7
311_1 78 years, male 533.7
2_1 77 years, female 529.0
42_1 85 years, male 526.9
254_1 77 years, female 526.6
264_1 73 years, female 507.6
313_1 79 years, female 506.7
317_1 60 years, male 500.0
120_1 70 years, female 487.4
495_1 57 years, female 477.2
315_1 62 years, female 476.0
17_1 71 years, male 465.7
351_1 91 years, male 464.0
139_1 64 years, female 455.7
288_1 66 years, female 437.2
491_1 89 years, female 436.4
413_1 59 years, female 434.6
119_1 70 years, female 431.2
149_1 88 years, male 430.7
506_1 65 years, male 417.3
89_1 63 years, male 395.1
41_1 94 years, female 374.1
109_1 81 years, female 370.1
314_1 67 years, male 360.6
452_1 88 years, female 358.2
308_1 70 years, female 357.2
295_1 61 years, female 353.4
4_1 88 years, female 349.7
501_1 88 years, male 262.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 175.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 175.9
FF:10030-101E3 24-65 years, mixed 175.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 814.3
Pig sample Sample description nTPM
Retina
nTPM: 814.3
Samples: 4

Max nTPM: 912.0
Min nTPM: 732.5
Sample A Female 732.5
Sample B Female 859.4
Sample C Male 912.0
Sample D Male 753.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4745.9
Mouse sample Sample description nTPM
Retina
nTPM: 4745.9
Samples: 4

Max nTPM: 5376.5
Min nTPM: 4047.7
Sample A Male 4982.1
Sample B Male 4577.1
Sample C Female 5376.5
Sample D Female 4047.7

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by the Knut & Alice Wallenberg Foundation.