We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene namei
Official gene symbol, which is typically a short form of the gene name, according to HGNC.
All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.
Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).
The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Chromosome
6
Cytoband
p21.1
Chromosome location (bp)
43171269 - 43181506
Number of transcriptsi
Number of protein-coding transcripts from the gene as defined by Ensembl.
The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).
In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl
The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.
At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.
Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).
The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).
If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.
Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
SRF-201
PROTEIN INFORMATIONi
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Transcription factors alpha-Helices exposed by beta-structures Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014)
Show all
GO:0000785 [chromatin] GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding] GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific] GO:0000987 [cis-regulatory region sequence-specific DNA binding] GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific] GO:0001569 [branching involved in blood vessel morphogenesis] GO:0001666 [response to hypoxia] GO:0001701 [in utero embryonic development] GO:0001707 [mesoderm formation] GO:0001764 [neuron migration] GO:0001829 [trophectodermal cell differentiation] GO:0001947 [heart looping] GO:0002011 [morphogenesis of an epithelial sheet] GO:0002042 [cell migration involved in sprouting angiogenesis] GO:0002521 [leukocyte differentiation] GO:0003257 [positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation] GO:0003677 [DNA binding] GO:0003682 [chromatin binding] GO:0003700 [DNA-binding transcription factor activity] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0005737 [cytoplasm] GO:0006355 [regulation of transcription, DNA-templated] GO:0006357 [regulation of transcription by RNA polymerase II] GO:0007015 [actin filament organization] GO:0007160 [cell-matrix adhesion] GO:0007275 [multicellular organism development] GO:0007369 [gastrulation] GO:0007507 [heart development] GO:0007616 [long-term memory] GO:0008134 [transcription factor binding] GO:0008285 [negative regulation of cell population proliferation] GO:0008306 [associative learning] GO:0009636 [response to toxic substance] GO:0009725 [response to hormone] GO:0010669 [epithelial structure maintenance] GO:0010735 [positive regulation of transcription via serum response element binding] GO:0010736 [serum response element binding] GO:0021766 [hippocampus development] GO:0022028 [tangential migration from the subventricular zone to the olfactory bulb] GO:0030036 [actin cytoskeleton organization] GO:0030038 [contractile actin filament bundle assembly] GO:0030155 [regulation of cell adhesion] GO:0030168 [platelet activation] GO:0030220 [platelet formation] GO:0030336 [negative regulation of cell migration] GO:0030878 [thyroid gland development] GO:0030900 [forebrain development] GO:0031175 [neuron projection development] GO:0031490 [chromatin DNA binding] GO:0033561 [regulation of water loss via skin] GO:0034097 [response to cytokine] GO:0035855 [megakaryocyte development] GO:0035912 [dorsal aorta morphogenesis] GO:0042803 [protein homodimerization activity] GO:0042826 [histone deacetylase binding] GO:0043149 [stress fiber assembly] GO:0043565 [sequence-specific DNA binding] GO:0043589 [skin morphogenesis] GO:0045059 [positive thymic T cell selection] GO:0045214 [sarcomere organization] GO:0045597 [positive regulation of cell differentiation] GO:0045773 [positive regulation of axon extension] GO:0045893 [positive regulation of transcription, DNA-templated] GO:0045944 [positive regulation of transcription by RNA polymerase II] GO:0045987 [positive regulation of smooth muscle contraction] GO:0046016 [positive regulation of transcription by glucose] GO:0046716 [muscle cell cellular homeostasis] GO:0046983 [protein dimerization activity] GO:0048538 [thymus development] GO:0048589 [developmental growth] GO:0048666 [neuron development] GO:0048821 [erythrocyte development] GO:0051091 [positive regulation of DNA-binding transcription factor activity] GO:0051150 [regulation of smooth muscle cell differentiation] GO:0051491 [positive regulation of filopodium assembly] GO:0055003 [cardiac myofibril assembly] GO:0060055 [angiogenesis involved in wound healing] GO:0060218 [hematopoietic stem cell differentiation] GO:0060261 [positive regulation of transcription initiation from RNA polymerase II promoter] GO:0060292 [long-term synaptic depression] GO:0060324 [face development] GO:0060347 [heart trabecula formation] GO:0060425 [lung morphogenesis] GO:0060532 [bronchus cartilage development] GO:0060534 [trachea cartilage development] GO:0060947 [cardiac vascular smooth muscle cell differentiation] GO:0061029 [eyelid development in camera-type eye] GO:0061145 [lung smooth muscle development] GO:0061629 [RNA polymerase II-specific DNA-binding transcription factor binding] GO:0070830 [bicellular tight junction assembly] GO:0070878 [primary miRNA binding] GO:0071333 [cellular response to glucose stimulus] GO:0090009 [primitive streak formation] GO:0090136 [epithelial cell-cell adhesion] GO:0090398 [cellular senescence] GO:0098609 [cell-cell adhesion] GO:1900222 [negative regulation of amyloid-beta clearance] GO:1902894 [negative regulation of pri-miRNA transcription by RNA polymerase II] GO:1902895 [positive regulation of pri-miRNA transcription by RNA polymerase II] GO:1990837 [sequence-specific double-stranded DNA binding]
The Human Protein Atlas project is funded
